Identification of functional mutations associated with environmental variance of litter size in rabbits

Table 1 Genomic regions associated with environmental variance of litter size in rabbits

OCU^a	Position (Mb)	Significant SNPs	p-value	\(\varvec{BF}\)^b	Genes located in the region
3	50.4–52.8	Affx-151987366	7.02e−5	13.88	SPDL1, DOCK2^c, INSYN2B^c, FOXI1^c, LCP2, KCNMB1, ENSOCUG00000020826, KCNIP1, GABRP, RANBP17, TLX3, FGF18^c, ENSOCUG00000022678, ENSOCUG00000011117^c, ENSOCUG00000018666
		Affx-151799106	7.66e−5	14.39
		Affx-151959457	8.79e−5	12.54
7	141.2	Affx-151820818	6.26e−5	24.88	AOX1
10	3.9–5.7	Affx-151981327	1.76e−5	58.37	HDAC9^c, FERD3L^c, TWISTNB, TMEM196^c, ENSOCUG00000019989, ENSOCUG00000018779, MACC1, ITGB8^c
		Affx-151890261	1.97e−5	58.48
		Affx-151932936	2.29e−5	69.79
		Affx-151906185	2.29e−5	70.82
		Affx-151891719	2.29e−5	68.65
14	162–163.2	Affx-151919621^d	8.65e−5	10.01	HUNK^c, MIS18A^c, URB1^c, ENSOCUG00000021276^c, EVA1C^c, CFAP298, SYNJ1, PAXBP1^c, C21orf62^c, ENSOCUG00000011671, OLIG1, PLCXD1, GTPBP6, ENSOCUG00000017611
		Affx-151789209	1.14e−4	12.13
		Affx-151983021^d	1.34e−4	10.91

^aOryctolagus cuniculus chromosome
^bBayes factor
^cCandidate genes with relevant variants identified by whole-genome sequencing analysis
^dSNPs that did not pass the additional tests

ISSN: 1297-9686