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Table 1 Genome windows identified by the HP analysis on different porcine chromosomes (SSC) and shared by four or more pig breeds

From: Whole-genome sequencing of European autochthonous and commercial pig breeds allows the detection of signatures of selection for adaptation of genetic resources to different breeding and production systems

Genome windows (SSC: start–end bp)

Number of windows

Pig populations

Number of SNPs

Annotated genes (± 200 kb)

1:170,300,001:170,400,001

1

Apulo-Calabrese, Casertana, Krškopolje, Majorcan Black

829

–

4:42,900,001:43,000,001

1

Black Slavonian, Nero Siciliano, Krškopolje, Gascon

683

TMEM67a, PDP1b, FAM92Ac, RBM12Bc

4:75,500,001:75,900,001

4

Cinta Senese, Apulo Calabrese, Krškopolje, Lithuanian White old type, Sarda, Italian Large White, Italian Landrace

2356

CHCHD7c, SDR16C5d, MOSc, PENKc, TMEM68d, LOC100626876c, TGS1d, LYNc, LOC106510084c, PLAG1a, XKR4d

8:12,900,001:13,000001

1

Bísara, Schwäbisch-Hällisches Schwein, Italian Large White, Italian Landrace, Majorcan Black

1067

NCAPGb, CAF16d, FAM184Bd, LCORLa

8:42,600,001:42,700,001

1

Bísara, Lithuanian White old type, Italian Large White, Italian Landrace

683

LOC102162630d, LOC100526059d, MAP9a, TLL1d, LOC100620475c

8:45,500,001:45,600,001

1

Bísara, Lithuanian White old type, Italian Large White, Italian Landrace

1482

PDGFCa

  1. aGenes affecting or associated to several traits and within the reported windows
  2. bGenes affecting or associated to several traits
  3. cOther genes within the reported windows
  4. dOther listed genes are ± 200 kb upstream or downstream the reported windows