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Table 3 Phasing results from AlphaPhase for the genotype scenarios per generation

From: Extending long-range phasing and haplotype library imputation algorithms to large and heterogeneous datasets

Scenario

All

Heterozygous

Time (min)

Memory (MB)

Correct

Unphased

Incorrect

Correct

Unphased

Incorrect

Illumina 50 Kv2

98.10

1.78

0.12

93.78

5.69

0.52

12

1636

Illumina HD

98.40

1.46

0.14

94.52

4.85

0.63

102

3822

Two-Illumina

96.40

3.24

0.36

92.43

6.13

1.44

20

1654

Two-mixed

96.91

2.60

0.49

95.12

3.55

1.34

19

1715

Three-MD

96.78

2.34

0.87

97.23

1.54

1.23

38

1971

Mixed MD/HD

75.44

22.39

2.18

80.84

14.45

4.70

98

3863