Table 5 Phasing results from Eagle2 for genotype scenarios per generation
Scenario | All | Heterozygous | Time (min) | Memory (MB) | ||||
|---|---|---|---|---|---|---|---|---|
Correct | Unphased | Incorrect | Correct | Unphased | Incorrect | |||
Illumina 50 Kv2 | 99.97 | 0.00 | 0.03 | 99.89 | 0.00 | 0.11 | 709 | 1404 |
Illumina HD | 99.83 | 0.00 | 0.17 | 99.25 | 0.00 | 0.75 | 2769 | 2639 |
Two-Illumina | 99.97 | 0.00 | 0.03 | 99.88 | 0.00 | 0.12 | 790 | 1382 |
Two-mixed | 99.98 | 0.00 | 0.02 | 99.89 | 0.00 | 0.11 | 811 | 1432 |
Three-MD | 99.98 | 0.00 | 0.02 | 99.92 | 0.00 | 0.08 | 881 | 1585 |
Mixed MD/HD | 99.85 | 0.00 | 0.15 | 99.31 | 0.00 | 0.69 | 1727 | 3573 |