The genetic heritage of Alpine local cattle breeds using genomic SNP data

Senczuk, Gabriele; Mastrangelo, Salvatore; Ciani, Elena; Battaglini, Luca; Cendron, Filippo; Ciampolini, Roberta; Crepaldi, Paola; Mantovani, Roberto; Bongioni, Graziella; Pagnacco, Giulio; Portolano, Baldassare; Rossoni, Attilio; Pilla, Fabio; Cassandro, Martino

doi:10.1186/s12711-020-00559-1

Genetics Selection Evolution

Table 1 Genetic diversity indices for the analyzed cattle breeds

From: The genetic heritage of Alpine local cattle breeds using genomic SNP data

Breed	Number	Code	H_o ± SD	H_e ± SD	MAF ± SD	N_e
Italian Holstein	32	HOLS	0.342 ± 0.171	0.336 ± 0.154	0.305 ± 0.209	77
Cika	26	CIKA	0.356 ± 0.163	0.347 ± 0.141	0.277 ± 0.163	107
Pinzgauer (Italy)	24	PZIT	0.350 ± 0.172	0.337 ± 0.149	0.282 ± 0.179	76
Pinzgauer (Austria)	30	PZAU	0.351 ± 0.163	0.342 ± 0.144	0.280 ± 0.173	122
Pustertaler	24	PUST	0.342 ± 0.185	0.324 ± 0.16	0.276 ± 0.180	62
Burlina	24	BURL	0.353 ± 0.167	0.345 ± 0.145	0.292 ± 0.185	83
Rendena	24	REND	0.334 ± 0.176	0.327 ± 0.156	0.274 ± 0.188	82
Tyrolean Grey	30	GRTY	0.335 ± 0.169	0.332 ± 0.152	0.272 ± 0.179	93
Simmental (Germany)	30	SIDE	0.339 ± 0.168	0.332 ± 0.151	0.269 ± 0.175	127
Simmental (Switzerland)	20	SISW	0.342 ± 0.177	0.330 ± 0.152	0.270 ± 0.178	92
Simmental (Italy)	31	SIIT	0.342 ± 0.167	0.333 ± 0.149	0.270 ± 0.174	113
Montbéliard	20	MONT	0.337 ± 0.193	0.316 ± 0.163	0.270 ± 0.198	60
Brown Swiss (Germany)	30	BRDE	0.319 ± 0.179	0.311 ± 0.163	0.270 ± 0.190	79
Brown Swiss	19	BRSW	0.320 ± 0.191	0.307 ± 0.167	0.268 ± 0.206	56
Brown Swiss (Italy)	32	BRIT	0.309 ± 0.185	0.301 ± 0.168	0.266 ± 0.211	65
Original Brown (Switzerland)	20	OBSW	0.338 ± 0.176	0.331 ± 0.151	0.272 ± 0.179	81
Original Brown (Italy)	18	OBIT	0.348 ± 0.179	0.334 ± 0.149	0.278 ± 0.183	90
Original Brown (Germany/Switzerland)	35	OBDS	0.338 ± 0.166	0.332 ± 0.151	0.270 ± 0.177	124
Evolène	21	EVOL	0.311 ± 0.185	0.309 ± 0.166	0.271 ± 0.206	59
Eringer	36	ERIN	0.333 ± 0.169	0.327 ± 0.155	0.270 ± 0.183	130
Pezzata Rossa D’Oropa	23	PRDO	0.335 ± 0.176	0.329 ± 0.154	0.271 ± 0.181	80
Abondance	20	ABON	0.346 ± 0.189	0.323 ± 0.159	0.272 ± 0.190	68
Tarine	18	TARI	0.336 ± 0.185	0.325 ± 0.158	0.272 ± 0.188	72
Vosgienne	20	VOSG	0.347 ± 0.178	0.335 ± 0.15	0.271 ± 0.174	75
Barà-Pustertaler	24	BPUS	0.351 ± 0.164	0.344 ± 0.142	0.275 ± 0.165	94
Varzese-Ottonese	30	VZOT	0.348 ± 0.164	0.341 ± 0.146	0.279 ± 0.174	87
Murnau-Werdenfelser	30	MAWE	0.349 ± 0.179	0.328 ± 0.156	0.274 ± 0.186	73
Jersey	20	JERS	0.297 ± 0.198	0.286 ± 0.176	0.286 ± 0.246	56

Observed (H_o) and expected (H_e) heterozygosity, average minor allele frequency (MAF), effective population size (N_e) and standard deviation (SD)

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ISSN: 1297-9686

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