From: X chromosome variants are associated with male fertility traits in two bovine populations
Trait | Chr. | Start | End | Peak position | P-value | MAF of peak SNP | Nearest gene |
---|---|---|---|---|---|---|---|
QTL in Brahman | |||||||
 PNS | X | 45,230,870 | 49,785,424 | 45,230,870 | 4 × 10−10 | 0.12 | DIAPH2 |
 HA | X | 47,584,977 | 52,590,608 | 49,961,998 | 7 × 10−15 | 0.10 | GPRASP1 |
 MA | X | 4,072,268 | 7,370,241 | 4,929,592 | 1 × 10−17 | 0.17 | ATP1B4 |
 Inhibin | 2 | 107,523,103 | 107,631,932 | 107,558,848 | 4 × 10−18 | 0.22 | SLC4A3 |
 DFI3 | 11 | 98,399,847 | 98,412,314 | 98,412,314 | 2 × 10−10 | 0.06 | TOR2A |
QTL in tropical composites | |||||||
 PD | X | 1,380,454 | 8,539,246 | 4,280,429 | 2 × 10−20 | 0.09 | NFKB |
X | 29,691,394 | 38,007,510 | 33,595,924 | 7 × 10−13 | 0.13 | MAMLD1 | |
X | 45,016,203 | 47,360,189 | 45,984,909 | 2 × 10−12 | 0.17 | DIAPH2 | |
X | 55,280,920 | 55,317,351 | 55,297,857 | 2 × 10−10 | 0.15 | RNF128 | |
 TD | X | 1,380,454 | 8,539,246 | 5,091,253 | 2 × 10−18 | 0.13 | CUL4B |
X | 40,278,180 | 41,069,102 | 40,509,046 | 2 × 10−9 | 0.17 | PCDH11X | |
 SC24 | 5 |  45,743,023 | 49,417,084 |  48,275,554 | 8 × 10−14 | 0.24 | MSRB3 |