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Table 2 Area under curve from receiver operating curves for resistance to E. tarda in Japanese flounder obtained by pedigree-based BLUP and genomic prediction procedures for three methods of pre-selection of SNPs (Geno1, 2, and 3) for five-fold cross-validation

From: Prediction of genomic breeding values based on pre-selected SNPs using ssGBLUP, WssGBLUP and BayesB for Edwardsiellosis resistance in Japanese flounder

Fold Pedigree BLUP Geno1 Geno2 Geno3
BayesB ssGBLUP WssGBLUP BayesB ssGBLUP WssGBLUP BayesB ssGBLUP WssGBLUP
1st 0.50 0.62 0.63 0.64 0.60 0.64 0.63 0.55 0.63 0.62
2nd 0.54 0.62 0.64 0.64 0.62 0.64 0.64 0.61 0.64 0.64
3rd 0.54 0.57 0.65 0.67 0.52 0.62 0.67 0.54 0.64 0.66
4th 0.57 0.68 0.72 0.74 0.70 0.74 0.73 0.69 0.73 0.72
5th 0.56 0.54 0.62 0.61 0.55 0.62 0.64 0.52 0.60 0.63
Mean 0.54 0.60 0.65 0.66 0.60 0.65 0.66 0.58 0.65 0.65