QTL IDa | BTA | Breed | Traits (# QTLb) | CI of the TOP-CIc | Variant with the most significant effect | CI of the EXT-CIf | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Bounds (Mbp) | # Genes | Position (bp) | Variant ID | Functional annotation | MAF | − log10(P) | be | sd | Bounds (Mbp) | # genes | ||||
37 | 1 | HOL | US(1) | 110.3–111.0 | 1 | 110,870,166 | rs42324415 | Intergenic | 0.32 | 9.3 | 0.19 | 0.031 | 110.3–111.0 | 1 |
38 | 2 | NOR | RUH(4) | 6.0–6.7 | 2 | 6,237,254 | rs385990556 | Intergenic | 0.02 | 16.5 | − 1.185 | 0.14 | 4.5–9.2 | 11 |
39 | 4 | HOL | UD(1) | 10.0–10.2 | 0 | 10,126,995 | rs42524022 | Intergenic | 0.36 | 8.5 | 0.131 | 0.022 | 10.0–10.2 | 0 |
40 | 4 | HOL | FTD(1) | 70.6–70.7 | 0 | 70,620,943 | rs210515134 | Intergenic | 0.47 | 8.9 | − 0.182 | 0.03 | 70.6–70.7 | 0 |
41 | 5 | HOL | TL(1) | 12.4–12.5 | 1 | 12,441,072 | rs109808447 | TMTC2 Intron | 0.14 | 25 | 0.379 | 0.036 | 12.4–12.5 | 1 |
42 | 5 | HOL | UD(1) | 88.7–88.9 | 2 | 88,800,994 | rs110461240 | ABCC9 intron | 0.45 | 12.4 | 0.186 | 0.026 | 88.7–88.9 | 2 |
42 | 5 | HOL | FUA(1) | 88.7–88.9 | 2 | 88,800,994 | rs110461240 | ABCC9 intron | 0.457 | 11.3 | 0.1787 | 0.026 | 88.7–88.9 | 2 |
43 | 6 | HOL | RUH(1) | 71.9–72.2 | 0 | 72,022,013 | rs136970036 | Intergenic | 0.28 | 14.9 | 0.272 | 0.034 | 71.9–72.2 | 0 |
44 | 6 | MON | UD(1) | 88.6–89.6 | 1 | 88,744,985 | rs110181141 | Intergenic | 0.37 | 9.2 | − 0.256 | 0.042 | 88.6–89.6 | 5 |
45 | 6 | HOL | SCS(1) | 88.4–89.2 | 3 | 88,881,928 | rs474137839 | Intergenic | 0.31 | 9.2 | 0.206 | 0.033 | 88.4–89.2 | 3 |
45 | 6 | HOL | UD(1) | 88.4–89.2 | 4 | 88,697,293 | rs110041776 | GC intron | 0.407 | 8.6 | 0.1789 | 0.03 | 88.4–89.2 | 4 |
46 | 8 | HOL | FTD(2) | 81.9–83.1 | 3 | 82,059,790 | rs134625094 | Intergenic | 0.11 | 10.8 | − 0.316 | 0.047 | 81.9–85.4 | 8 |
47 | 9 | MON | SCS(1) | 23.4–23.7 | 1 | 23,620,280 | rs437752750 | ME1 Intron | 0.02 | 9.5 | − 0.718 | 0.114 | 23.4–23.7 | 1 |
48 | 9 | MON | SCS(1) | 25.7–26.3 | 1 | 25,888,225 | rs797068196 | HEY2 upstream | 0.02 | 9.1 | − 0.78 | 0.127 | 25.7–26.3 | 1 |
49 | 9 | MON | SCS(1) | 28.1–29.2 | 1 | 28,197,098 | rs455285205 | 38849d intron | 0.01 | 8.2 | − 0.859 | 0.147 | 28.1–29.2 | 1 |
50 | 14 | MON | RUH(1) | 24.4–25.1 | 3 | 25,052,440 | rs210030313 | PLAG1 5′UTR/CHCHD7 upstream | 0.07 | 12.5 | − 0.506 | 0.07 | 24.4–25.1 | 3 |
51 | 17 | MON | FUA(1) | 62.6–62.7 | 0 | 62,679,331 | rs109168890 | Intergenic | 0.42 | 13.1 | − 0.283 | 0.038 | 62.6–62.7 | 0 |
51 | 17 | MON | US(1) | 62.6–62.9 | 0 | 62,714,882 | rs109332098 | Intergenic | 0.215 | 12.3 | − 0.358 | 0.049 | 62.6–62.9 | 0 |
52 | 17 | NOR | US(1) | 62.5–62.9 | 2 | 62,694,032 | rs109134926 | Intergenic | 0.21 | 10.0 | − 0.272 | 0.042 | 62.5–62.9 | 2 |
53 | 19 | HOL | MSS(1) | 7.5–7.7 | 1 | 7,565,865 | rs445450010 | Intergenic | 0.47 | 10.5 | − 0.153 | 0.023 | 7.5–7.7 | 1 |
54 | 19 | HOL | MSS(1) | 59.3–60.4 | 0 | 60,151,690 | rs109603247 | Intergenic | 0.18 | 8.9 | 0.186 | 0.031 | 59.3–60.4 | 0 |
55 | 19 | MON | UD(1) | 60.5–61.5 | 0 | 60,523,834 | rs134785404 | Intergenic | 0.37 | 9.0 | − 0.199 | 0.032 | 60.5–61.5 | 0 |
55 | 19 | MON | MSS(1) | 59.3–60.4 | 0 | 60,151,690 | rs109603247 | Intergenic | 0.183 | 8.9 | 0.1856 | 0.031 | 59.3–60.4 | 0 |
56 | 20 | HOL | FUA(3) | 26.1-28.0 | 2 | 27,082,437 | rs209792391 | Intergenic | 0.29 | 10.9 | − 0.192 | 0.028 | 25.6––28 | 3 |
57 | 24 | MON | UB(1) | 33.2–35.3 | 11 | 34,288,737 | rs382921722 | Intergenic | 0.4 | 9.1 | 0.326 | 0.053 | 33.2–35.3 | 11 |
58 | 24 | HOL | RUH(1) | 33.3–34.6 | 3 | 34,310,163 | rs482718265 | Intergenic | 0.04 | 10.5 | − 0.377 | 0.057 | 33.3–34.6 | 3 |
59 | 26 | HOL | TO(1) | 38.5–38.9 | 2 | 38,725,076 | rs133440951 | Intergenic | 0.05 | 8.6 | − 0.302 | 0.051 | 38.5–38.9 | 2 |
60 | 28 | MON | MSS(1) | 19.3–21.1 | 4 | 20,158,547 | rs43101108 | Intergenic | 0.09 | 8.7 | − 0.342 | 0.057 | 19.3–21.1 | 4 |
61 | 29 | HOL | UD(3) | 49.1–50.3 | 4 | 49,421,004 | rs208859984 | KCNQ1 Intron | 0.31 | 12.7 | − 0.167 | 0.023 | 49.1–51.5 | 24 |
61 | 29 | HOL | SCS(1) | 49.3–50.3 | 4 | 49,782,986 | rs437410319 | KCNQ1 Intron | 0.066 | 8.4 | 0.2493 | 0.042 | 49.3–50.3 | 4 |
61. | 29 | HOL | UB(2) | 48.3–50.3 | 8 | 49,299,622 | rs210749543 | NAP1L4 Intron | 0.052 | 10.8 | − 0.347 | 0.051 | 48.3–51.2 | 8 |