Table 1 The overlap between eQTL analysis, ASE analysis and correlation analysis
Gene_name | eQTL analysis | ASE analysis | Correlation analysis | ||||||
|---|---|---|---|---|---|---|---|---|---|
SNP_id | Fdr | SNP_id | Num_Het | Num_ASE | Ratio | Traits | Cor | Fdr | |
HUS1 | 18:48910892 | 2.39E − 19 | 18:48526014 | 122 | 71 | 0.58 | mean_B | −0.27 | 2.82E − 02 |
mean_H | −0.30 | 4.03E − 02 | |||||||
SPECC1 | 12:59392739 | 3.75E − 14 | 12:59557437 | 120 | 26 | 0.22 | pH_24h | 0.25 | 3.18E − 02 |
mean_B | −0.24 | 4.84E − 02 | |||||||
METTL22 | 3:34053010 | 1.99E − 11 | 3:34040204 | 78 | 25 | 0.32 | mean_H | −0.29 | 4.49E − 02 |
ZFAND2B | 15:120963216 | 4.85E − 06 | 15:121243305 | 74 | 73 | 0.99 | pH_45min | −0.33 | 1.97E − 03 |
PYGM | 2:7381573 | 1.19E − 04 | 2:7407552 | 109 | 102 | 0.94 | pH_45min | 0.35 | 6.92E − 04 |
mean_B | 0.28 | 2.73E − 02 | |||||||
ENSSSCG00000009631 | 14:7718361 | 4.29E − 04 | 14:6978183 | 160 | 50 | 0.47 | pH_24h | −0.25 | 3.01E − 02 |
ABRA | 4:30027414 | 4.36E − 04 | 4:30712640 | 108 | 107 | 0.99 | mean_B | −0.28 | 2.59E − 02 |
RSL1D1 | 3:30749727 | 2.59E − 03 | 3:31285647 | 117 | 16 | 0.14 | pH_24h | 0.29 | 1.05E − 02 |
CAV3 | 13:64696229 | 3.04E − 03 | 13:65131086 | 122 | 97 | 0.80 | pH_24h | −0.25 | 3.16E − 02 |
mean_L | 0.32 | 2.79E − 02 | |||||||
GMPR | 7:12312194 | 3.07E − 03 | 7:12261459 | 126 | 124 | 0.98 | pH_24h | −0.25 | 2.93E − 02 |
NTN4 | 5:86726806 | 3.83E − 03 | 5:87783446 | 89 | 11 | 0.12 | mean_L | −0.36 | 6.25E − 03 |
GPC1 | 15:139006307 | 5.29E − 03 | 15:139483525 | 119 | 56 | 0.47 | pH_45min | −0.26 | 4.99E − 02 |
TRIM54 | 3:111962587 | 7.51E − 03 | 3:111836687 | 108 | 36 | 0.33 | mean_B | −0.26 | 4.08E − 02 |
pH_24h | 0.26 | 2.83E − 02 | |||||||
LGMN | 7:114180118 | 8.75E − 03 | 7:114200066 | 145 | 40 | 0.28 | pH_45min | −0.28 | 2.33E − 02 |
CACNA1S | 10:23528382 | 1.14E − 02 | 10:23530021 | 133 | 71 | 0.53 | pH_45min | 0.26 | 4.43E − 02 |
ENSSSCG00000020808 | 3:16083309 | 1.59E − 02 | 3:16844732 | 109 | 41 | 0.38 | mean_B | −0.27 | 2.73E − 02 |
MTRR | 16:74265935 | 1.81E − 02 | 16:74245560 | 66 | 13 | 0.20 | pH_24h | 0.24 | 4.53E − 02 |
CCT8 | 13:192188992 | 1.83E − 02 | 13:192414026 | 58 | 12 | 0.21 | mean_B | −0.27 | 2.96E − 02 |
ZFAND2A | 3:930630 | 2.11E − 02 | 3:757286 | 106 | 21 | 0.20 | pH_24h | 0.25 | 3.18E − 02 |
RRP7A | 5:6407132 | 2.17E − 02 | 5:6216045 | 137 | 44 | 0.32 | mean_B | −0.28 | 2.73E − 02 |
SOD2 | 1:7722553 | 2.27E − 02 | 1:7679607 | 184 | 115 | 0.63 | pH_24h | 0.25 | 3.03E − 02 |
ANKRD10 | 11:78298873 | 2.37E − 02 | 11:77325740 | 94 | 10 | 0.11 | pH_24h | 0.24 | 4.35E − 02 |
SDR39U1 | 7:75705436 | 2.64E − 02 | 7:74851797 | 99 | 45 | 0.45 | mean_B | 0.24 | 4.84E − 02 |
PLA2G7 | 7:41182729 | 3.35E − 02 | 7:41498072 | 186 | 49 | 0.26 | mean_B | −0.27 | 2.73E − 02 |
NAT9 | 12:5991040 | 3.53E − 02 | 12:6466570 | 131 | 53 | 0.40 | mean_H | −0.30 | 4.03E − 02 |
NPNT | 8:116112745 | 3.72E − 02 | 8:115860561 | 44 | 15 | 0.34 | pH_24h | 0.26 | 2.55E − 02 |
GRK3 | 14:44316076 | 3.76E − 02 | 14:43439845 | 68 | 33 | 0.49 | pH_24h | 0.25 | 3.33E − 02 |
SMIM3 | 2:150955856 | 3.95E − 02 | 2:151763489 | 121 | 11 | 0.09 | mean_B | −0.25 | 4.48E − 02 |
ACTN3 | 2:6263381 | 4.35E − 02 | 2:5861691 | 117 | 109 | 0.93 | pH_24h | −0.27 | 2.00E − 02 |
NR4A1 | 5:17110306 | 4.74E − 02 | 5:17405098 | 74 | 22 | 0.30 | pH_45min | 0.49 | 1.86E − 09 |
CTGF | 1:31914264 | 4.75E − 02 | 1:31676377 | 96 | 18 | 0.19 | pH_45min | 0.27 | 2.77E − 02 |
DYNLT1 | 1:8669156 | 4.82E − 02 | 1:8562162 | 129 | 58 | 0.45 | pH_24h | −0.30 | 8.57E − 03 |
KLHL40 | 13:27052606 | 4.90E − 02 | 13:26209704 | 86 | 33 | 0.38 | pH_24h | 0.30 | 9.62E − 03 |