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Table 6 Top 10 of the GO terms and KEGG pathways enriched by the three feed efficiency networksa

From: Gene networks for three feed efficiency criteria reveal shared and specific biological processes

GOID GO term P-value % Associated genes Number of genes
RFI
 GO:1901137 Carbohydrate derivative biosynthetic process 2.02E−04 6.42 35
 GO:000900 Glycoprotein metabolic process 2.15E−04 7.74 24
 GO:0043413 macromolecule glycosylation 2.61E−04 8.88 19
 GO:0006486 Protein glycosylation 2.61E−04 8.88 19
 GO:0009101 Glycoprotein biosynthetic process 3.08E−04 8.59 22
 GO:1901135 Carbohydrate derivative metabolic process 2.06E−03 4.97 45
 GO:0071896 Protein localization to adherens junction 3.47E−03 75.00 3
 KEGG:04371 Apelin signaling pathway 3.80E−03 9.15 13
 KEGG:00512 Mucin type O-glycan biosynthesis 4.30E−03 19.35 6
 KEGG:04022 cGMP-PKG signaling pathway 4.37E−03 8.43 14
RG
 GO:0006890 Retrograde vesicle-mediated transport, Golgi to ER 3.00E−04 20.59 7
 GO:0043087 Regulation of GTPase activity 1.99E−03 5.32 19
 GO:0043547 Positive regulation of GTPase activity 7.03E−03 5.23 16
 GO:0009101 Glycoprotein biosynthetic process 8.65E−03 5.47 14
 GO:0008589 Regulation of smoothened signaling pathway 1.26E−02 10.34 6
 GO:0009100 Glycoprotein metabolic process 1.28E−02 4.84 15
 KEGG:04713 Circadian entrainment 1.32E−02 8.00 8
 KEGG:04713 Circadian entrainment 1.32E−02 8.00 8
 KEGG:04913 Ovarian steroidogenesis 1.33E−02 10.00 6
 GO:0007030 Golgi organization 1.40E−02 8.24 7
FE
 GO:0009101 Glycoprotein biosynthetic process 9.39E−06 8.98 23
 GO:0009100 Glycoprotein metabolic process 1.04E−05 8.39 26
 GO:1901137 Carbohydrate derivative biosynthetic process 1.31E−05 6.42 35
 GO:1901135 Carbohydrate derivative metabolic process 3.36E−05 5.19 47
 KEGG:00512 Mucin type O-glycan biosynthesis 3.95E−05 25.81 8
 GO:0043413 Macromolecule glycosylation 2.24E−04 8.41 18
 GO:0006486 Protein glycosylation 2.24E−04 8.41 18
 GO:1901566 Organonitrogen compound biosynthetic process 2.83E−04 4.37 59
 GO:0030948 Negative regulation of vascular endothelial growth factor receptor signaling pathway 5.27E−03 60.00 3
 KEGG:04971 Gastric acid secretion 1.37E−02 10.81 8
  1. RFI residual feed intake, RG residual gain, FE feed efficiency ratio
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