Table 6 Top 10 of the GO terms and KEGG pathways enriched by the three feed efficiency networksa
From: Gene networks for three feed efficiency criteria reveal shared and specific biological processes
GOID | GO term | P-value | % Associated genes | Number of genes |
|---|---|---|---|---|
RFI | ||||
 GO:1901137 | Carbohydrate derivative biosynthetic process | 2.02E−04 | 6.42 | 35 |
 GO:000900 | Glycoprotein metabolic process | 2.15E−04 | 7.74 | 24 |
 GO:0043413 | macromolecule glycosylation | 2.61E−04 | 8.88 | 19 |
 GO:0006486 | Protein glycosylation | 2.61E−04 | 8.88 | 19 |
 GO:0009101 | Glycoprotein biosynthetic process | 3.08E−04 | 8.59 | 22 |
 GO:1901135 | Carbohydrate derivative metabolic process | 2.06E−03 | 4.97 | 45 |
 GO:0071896 | Protein localization to adherens junction | 3.47E−03 | 75.00 | 3 |
 KEGG:04371 | Apelin signaling pathway | 3.80E−03 | 9.15 | 13 |
 KEGG:00512 | Mucin type O-glycan biosynthesis | 4.30E−03 | 19.35 | 6 |
 KEGG:04022 | cGMP-PKG signaling pathway | 4.37E−03 | 8.43 | 14 |
RG | ||||
 GO:0006890 | Retrograde vesicle-mediated transport, Golgi to ER | 3.00E−04 | 20.59 | 7 |
 GO:0043087 | Regulation of GTPase activity | 1.99E−03 | 5.32 | 19 |
 GO:0043547 | Positive regulation of GTPase activity | 7.03E−03 | 5.23 | 16 |
 GO:0009101 | Glycoprotein biosynthetic process | 8.65E−03 | 5.47 | 14 |
 GO:0008589 | Regulation of smoothened signaling pathway | 1.26E−02 | 10.34 | 6 |
 GO:0009100 | Glycoprotein metabolic process | 1.28E−02 | 4.84 | 15 |
 KEGG:04713 | Circadian entrainment | 1.32E−02 | 8.00 | 8 |
 KEGG:04713 | Circadian entrainment | 1.32E−02 | 8.00 | 8 |
 KEGG:04913 | Ovarian steroidogenesis | 1.33E−02 | 10.00 | 6 |
 GO:0007030 | Golgi organization | 1.40E−02 | 8.24 | 7 |
FE | ||||
 GO:0009101 | Glycoprotein biosynthetic process | 9.39E−06 | 8.98 | 23 |
 GO:0009100 | Glycoprotein metabolic process | 1.04E−05 | 8.39 | 26 |
 GO:1901137 | Carbohydrate derivative biosynthetic process | 1.31E−05 | 6.42 | 35 |
 GO:1901135 | Carbohydrate derivative metabolic process | 3.36E−05 | 5.19 | 47 |
 KEGG:00512 | Mucin type O-glycan biosynthesis | 3.95E−05 | 25.81 | 8 |
 GO:0043413 | Macromolecule glycosylation | 2.24E−04 | 8.41 | 18 |
 GO:0006486 | Protein glycosylation | 2.24E−04 | 8.41 | 18 |
 GO:1901566 | Organonitrogen compound biosynthetic process | 2.83E−04 | 4.37 | 59 |
 GO:0030948 | Negative regulation of vascular endothelial growth factor receptor signaling pathway | 5.27E−03 | 60.00 | 3 |
 KEGG:04971 | Gastric acid secretion | 1.37E−02 | 10.81 | 8 |