Table 1 Average elements of the genomic (\({\mathbf{G}}\)) and dominance (\({\mathbf{D}}\)) relationship matrix using biological parameterization when assuming Hardy–Weinberg equilibrium (HW), non-Hardy–Weinberg equilibrium (NO-HW), orthogonal NOIA (NOIA), or the Gram- Schmidt process for additive (GSP-A), dominance (GSP-D), and orthonormal additive (GSP-N) scales
Relationship matrix | ||||||
|---|---|---|---|---|---|---|
HW | NO-HW | NOIA | GSP-A | GSP-D | GSP-N | |
Average diagonal of \({\mathbf{G}}\) | 0.942 | 0.994 | 1.000 | 0.999 | 0.994 | 1.000 |
Average off-diagonal of \({\mathbf{G}}\) | − 0.001 | − 0.001 | − 0.001 | − 0.001 | − 0.001 | − 0.001 |
Range of eigenvalues of \({\mathbf{G}}\) | 0.000–74.34 | 0.000–78.45 | 0.000–78.92 | − 0.000 to 78.45 | 0.001–69.97 | 0.000–72.17 |
Average diagonal of \({\mathbf{D}}\) | 1.003 | 0.994 | 1.000 | 0.994 | 1.000 | 1.000 |
Average off-diagonal of \({\mathbf{D}}\) | 0.012 | − 0.001 | − 0.001 | − 0.001 | − 0.001 | − 0.001 |