|
SSC
|
Interval
|
#SNP
|
Interval Mbp
|
Top SNP
|
Top SNP location bp
|
Top SNP P-value
|
Top SNP FDR
|
Top SNP MAF
|
Beta
|
Trait
|
|---|
|
1
|
I1
|
1
|
–
|
rs339761632
|
13,501,755
|
4.64 × 10–8
|
0.02
|
0.06
|
4.84
|
PDROP
|
|
1
|
I2
|
8
|
82.90–83.49
|
rs81354986
|
82,895,619
|
1.69 × 10–6
|
0.03
|
0.07
|
5.05
|
HABN
|
|
1
|
I3
|
8
|
94.88–98.74
|
rs327733412
|
94,880,167
|
1.61 × 10–7
|
0.02
|
0.07
|
5.65
|
HABN
|
|
1
|
I4
|
1
|
–
|
rs337166779
|
126,397,198
|
2.05 × 10–6
|
0.03
|
0.06
|
5.02
|
HABN
|
|
1
|
I5
|
11
|
243.86–246.44
|
rs343194423
|
246,224,386
|
1.72 × 10–7
|
0.01
|
0.07
|
3.17
|
NABN
|
|
1
|
I6
|
2
|
258.54–258.55
|
rs332256425
|
258,548,786
|
1.76 × 10–6
|
0.04
|
0.06
|
3.44
|
NABN
|
|
3
|
I1
|
1
|
–
|
rs332055717
|
2,911,413
|
6.35 × 10–8
|
0.01
|
0.09
|
5.07
|
HABN
|
|
3
|
I2
|
3
|
113.75–113.84
|
rs328292697
|
113,750,595
|
1.09 × 10–7
|
0.01
|
0.07
|
3.41
|
NABN
|
|
4
|
I1
|
2
|
2.41–2.42
|
rs318575212
|
2,412,006
|
2.88 × 10–8
|
0.01
|
0.08
|
4.11
|
ACRO_5
|
|
rs332927981
|
2,415,239
|
|
6
|
I1
|
2
|
65.60–66.66
|
rs335394654
|
65,597,553
|
1.86 × 10–7
|
0.03
|
0.14
|
3.04
|
ACRO_5
|
|
7
|
I1
|
2
|
6.20–6.38
|
rs326239534
|
6,377,172
|
9.87 × 10–6
|
0.02
|
0.17
|
-9.15
|
MT_5
|
|
7
|
I2
|
2
|
85.73–86.88
|
rs336588919
|
86,884,279
|
4.13 × 10–8
|
0.01
|
0.06
|
3.75
|
NABN
|
|
9
|
I1
|
2
|
5.76–5.78
|
rs1110111787
|
5,776,597
|
1.55 × 10–7
|
0.02
|
0.07
|
5.43
|
HABN
|
|
9
|
I2
|
1
|
–
|
rs342738178
|
28,463,580
|
1.53 × 10–5
|
0.03
|
0.14
|
− 10.42
|
MT_5, MT_90
|
|
9
|
I3
|
1
|
–
|
rs328217450
|
137,959,590
|
4.77 × 10–8
|
0.02
|
0.18
|
2.36
|
R_ACRO
|
|
13
|
I1
|
18
|
25.36–28.47
|
rs690794887
|
25,535,100
|
3.06 × 10–7
|
0.02
|
0.14
|
3.78
|
HABN
|
|
13
|
I2
|
3
|
33.82–37.65
|
rs327865244
|
33,819,549
|
3.79 × 10–8
|
0.01
|
0.15
|
4.28
|
HABN
|
|
16
|
I1
|
1
|
–
|
rs324239602
|
6,476,358
|
6.08 × 10–6
|
0.01
|
0.46
|
9.07
|
MT_90
|
- SSC, Sus scrofa chromosome; #SNP, number of SNPs significantly associated (FDR) with the trait; Interval, region of the GWAS interval; Beta, additive effect; FDR, false discovery rate; MAF, minor allele frequency; ACRO_5, abnormal acrosomes 5 min; HABN, head abnormalities; NABN, neck abnormalities; PDROP, proximal droplets; R_ACRO, ratio acrosomes; MT_5, motility 5 min; MT_90, motility 90 min
