Table 2 Summary of the results of the genome wide association analysis for sperm quality traits
SSC | Interval | #SNP | Interval Mbp | Top SNP | Top SNP location bp | Top SNP P-value | Top SNP FDR | Top SNP MAF | Beta | Trait |
|---|---|---|---|---|---|---|---|---|---|---|
1 | I1 | 1 | – | rs339761632 | 13,501,755 | 4.64 × 10–8 | 0.02 | 0.06 | 4.84 | PDROP |
1 | I2 | 8 | 82.90–83.49 | rs81354986 | 82,895,619 | 1.69 × 10–6 | 0.03 | 0.07 | 5.05 | HABN |
1 | I3 | 8 | 94.88–98.74 | rs327733412 | 94,880,167 | 1.61 × 10–7 | 0.02 | 0.07 | 5.65 | HABN |
1 | I4 | 1 | – | rs337166779 | 126,397,198 | 2.05 × 10–6 | 0.03 | 0.06 | 5.02 | HABN |
1 | I5 | 11 | 243.86–246.44 | rs343194423 | 246,224,386 | 1.72 × 10–7 | 0.01 | 0.07 | 3.17 | NABN |
1 | I6 | 2 | 258.54–258.55 | rs332256425 | 258,548,786 | 1.76 × 10–6 | 0.04 | 0.06 | 3.44 | NABN |
3 | I1 | 1 | – | rs332055717 | 2,911,413 | 6.35 × 10–8 | 0.01 | 0.09 | 5.07 | HABN |
3 | I2 | 3 | 113.75–113.84 | rs328292697 | 113,750,595 | 1.09 × 10–7 | 0.01 | 0.07 | 3.41 | NABN |
4 | I1 | 2 | 2.41–2.42 | rs318575212 | 2,412,006 | 2.88 × 10–8 | 0.01 | 0.08 | 4.11 | ACRO_5 |
rs332927981 | 2,415,239 | |||||||||
6 | I1 | 2 | 65.60–66.66 | rs335394654 | 65,597,553 | 1.86 × 10–7 | 0.03 | 0.14 | 3.04 | ACRO_5 |
7 | I1 | 2 | 6.20–6.38 | rs326239534 | 6,377,172 | 9.87 × 10–6 | 0.02 | 0.17 | -9.15 | MT_5 |
7 | I2 | 2 | 85.73–86.88 | rs336588919 | 86,884,279 | 4.13 × 10–8 | 0.01 | 0.06 | 3.75 | NABN |
9 | I1 | 2 | 5.76–5.78 | rs1110111787 | 5,776,597 | 1.55 × 10–7 | 0.02 | 0.07 | 5.43 | HABN |
9 | I2 | 1 | – | rs342738178 | 28,463,580 | 1.53 × 10–5 | 0.03 | 0.14 | − 10.42 | MT_5, MT_90 |
9 | I3 | 1 | – | rs328217450 | 137,959,590 | 4.77 × 10–8 | 0.02 | 0.18 | 2.36 | R_ACRO |
13 | I1 | 18 | 25.36–28.47 | rs690794887 | 25,535,100 | 3.06 × 10–7 | 0.02 | 0.14 | 3.78 | HABN |
13 | I2 | 3 | 33.82–37.65 | rs327865244 | 33,819,549 | 3.79 × 10–8 | 0.01 | 0.15 | 4.28 | HABN |
16 | I1 | 1 | – | rs324239602 | 6,476,358 | 6.08 × 10–6 | 0.01 | 0.46 | 9.07 | MT_90 |