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Table 5 R2 and phenotypic variance for each trait from the RNA model and SNP panel

From: A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine

Acronym RNA model SNP panel
R2 P-value Phenotypic variance explained (SE)
CON 0.17 0.82 0.05 (0.05)
VIAB_5 0.43 0.06 0.27 (0.07)
VIAB_90 0.23 0.61 0.28 (0.07)
ORT 0.22 0.62 0.24 (0.07)
HABN 0.16 0.84 0.29 (0.06)
NABN 0.22 0.64 0.36 (0.07)
TABN 0.26 0.49 0.26 (0.07)
PDROP 0.68  < 0.0001 0.17 (0.07)
DDROP 0.42 0.07 0.06 (0.05)
MT_5 0.46 0.03 0.31 (0.07)
MT_90 0.34 0.22 0.30 (0.07)
VAP_5 0.58 0.002 0.34 (0.07)
VAP_90 0.55 0.005 0.34 (0.07)
VCL_5 0.61 0.001 0.33 (0.07)
VCL_90 0.55 0.01 0.34 (0.07)
VSL_5 0.36 0.16 0.31 (0.07)
VSL_90 0.61 0.001 0.33 (0.07)
ACRO_5 0.5 0.02 0.21 (0.06)
ACRO_90 0.21 0.68 0.23 (0.07)
R_MT 0.3 0.35 0.13 (0.06)
R_VAP 0.18 0.79 0.18 (0.07)
R_VCL 0.28 0.42 0.14 (0.07)
R_VSL 0.21 0.68 0.21 (0.07)
R_VIAB 0.44 0.05 0.23 (0.07)
R_ACRO 0.57 0.003 0.19 (0.07)
  1. Acronym descriptions are in Table 1
  2. SE standard error
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Genetics Selection Evolution

ISSN: 1297-9686