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Table 5 R2 and phenotypic variance for each trait from the RNA model and SNP panel

From: A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine

Acronym

RNA model

SNP panel

R2

P-value

Phenotypic variance explained (SE)

CON

0.17

0.82

0.05 (0.05)

VIAB_5

0.43

0.06

0.27 (0.07)

VIAB_90

0.23

0.61

0.28 (0.07)

ORT

0.22

0.62

0.24 (0.07)

HABN

0.16

0.84

0.29 (0.06)

NABN

0.22

0.64

0.36 (0.07)

TABN

0.26

0.49

0.26 (0.07)

PDROP

0.68

 < 0.0001

0.17 (0.07)

DDROP

0.42

0.07

0.06 (0.05)

MT_5

0.46

0.03

0.31 (0.07)

MT_90

0.34

0.22

0.30 (0.07)

VAP_5

0.58

0.002

0.34 (0.07)

VAP_90

0.55

0.005

0.34 (0.07)

VCL_5

0.61

0.001

0.33 (0.07)

VCL_90

0.55

0.01

0.34 (0.07)

VSL_5

0.36

0.16

0.31 (0.07)

VSL_90

0.61

0.001

0.33 (0.07)

ACRO_5

0.5

0.02

0.21 (0.06)

ACRO_90

0.21

0.68

0.23 (0.07)

R_MT

0.3

0.35

0.13 (0.06)

R_VAP

0.18

0.79

0.18 (0.07)

R_VCL

0.28

0.42

0.14 (0.07)

R_VSL

0.21

0.68

0.21 (0.07)

R_VIAB

0.44

0.05

0.23 (0.07)

R_ACRO

0.57

0.003

0.19 (0.07)

  1. Acronym descriptions are in Table 1
  2. SE standard error