Table 2 Summary of the statistics of SNPs associated with recombination frequency
From: Male recombination map of the autosomal genome in German Holstein
Chr | SNP | bp | Frequency | P-value | BF | Candidate gene |
|---|---|---|---|---|---|---|
3 | INRA-598 | 45,930,136 | 0.21 | 8.67 × 10−8 | 0.003 | |
3 | ARS-BFGL-NGS-112152 | 45,978,363 | 0.21 | 1.42 × 10−7 | 0.006 | |
3 | Hapmap59096-rs29024776 | 49,181,271 | 0.21 | 1.97 × 10−8 | 0.001 | GCLM |
3 | Hapmap58808-rs29017431 | 52,452,892 | 0.20 | 1.98 × 10−8 | 0.001 | |
3 | INRA-170 | 52,783,346 | 0.20 | 1.32 × 10−7 | 0.006 | |
6 | ARS-BFGL-NGS-28350 | 114,972,434 | 0.26 | 1.88 × 10−12 | 0.000 | |
6 | ARS-BFGL-NGS-18656 | 115,871,184 | 0.39 | 1.28 × 10−9 | 0.000 | |
6 | ARS-BFGL-NGS-104112 | 115,942,196 | 0.30 | 1.73 × 10−7 | 0.007 | |
6 | ARS-BFGL-NGS-61359 | 116,788,648 | 0.28 | 2.36 × 10−13 | 0.000 | |
6 | ARS-BFGL-NGS-10037 | 117,015,280 | 0.27 | 1.50 × 10−16 | 0.000 | |
6 | ARS-BFGL-NGS-112242 | 117,124,190 | 0.29 | 7.68 × 10−15 | 0.000 | |
6 | BTB-00284077 | 117,271,685 | 0.27 | 5.18 × 10−15 | 0.000 | |
6 | ARS-BFGL-NGS-117763 | 117,368,760 | 0.29 | 2.89 × 10−19 | 0.000 | |
6 | ARS-BFGL-NGS-110507 | 117,390,034 | 0.29 | 1.89 × 10−19 | 0.000 | CPLX1, GAK, PCGF3 |
10 | ARS-BFGL-NGS-99693 | 17,886,463 | 0.61 | 1.09 × 10−7 | 0.004 | |
10 | Hapmap47676-BTA-61231 | 21,768,228 | 0.15 | 6.75 × 10−8 | 0.003 | |
10 | ARS-BFGL-NGS-19822 | 22,284,939 | 0.42 | 2.09 × 10−7 | 0.009 | |
10 | ARS-BFGL-NGS-42815 | 25,998,000 | 0.59 | 1.08 × 10−7 | 0.004 | REC114 |
10 | ARS-BFGL-NGS-118433 | 26,023,168 | 0.59 | 1.08 × 10−7 | 0.004 | |
10 | BTB-00438757 | 86,199,353 | 0.40 | 1.85 × 10−8 | 0.001 | |
10 | Hapmap57084-ss46526565 | 86,260,186 | 0.40 | 4.17 × 10−9 | 0.000 | |
10 | BTB-00438922 | 86,284,751 | 0.40 | 2.05 × 10−7 | 0.009 | |
10 | BTA-78285-no-rs | 86,322,591 | 0.55 | 2.68 × 10−9 | 0.000 | NEK9 |
10 | UA-IFASA-7857 | 86,379,951 | 0.56 | 8.37 × 10−8 | 0.003 |