A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species

Table 1 Data overview per species

Animal species	Populations before QC	Animals before QC	Populations after QC	Animals after QC	SNPs before QC	References
Cat	47	2078	26	1657	58,888	[23]
Cattle	144	4103	50	2263	45,926	[28, 49,50,51,52,53,54,55,56,57,58]
Dog	146	5406	49	4414	160,432	[24]
Goat	143	4653	96	4327	49,943	[25, 47]
Horse	37	795	35	774	50,042	[26, 48]
Pig	146	2113	78	1438	52,783	[27]
Sheep	118	3609	100	3490	52,413	[28,29,30,31,32,33]
Water buffalo	16	346	8	270	53,830	[34]
Total	797	23,103	442	18,633

The number of populations and individuals are shown for the raw datasets and after applying quality control. The number of autosomal SNPs available per species before quality control is also shown. The main cause for excluding a population was a lack of a sufficient number of individuals (n < 15)
QC quality control, SNPs single nucleotide polymorphisms

ISSN: 1297-9686