Skip to main content

Table 1 Descriptive statistics of the datasets in the reference scenario full and the five alternative scenarios

From: The predictive ability of indirect genetic models is reduced when culled animals are omitted from the data

 

full

noPhen

testdays

noPhenGrp

noPhenGrp15

predPhen

Number of animals

123,567

118,147

122,974

81,825

115,869

123,567

Number of sires

676

676

676

669

675

676

Number of dams

12,293

12,249

12,288

11,678

12,226

12,293

Number of litters

16,681

16,613

16,674

15,739

16,587

16,681

Number of groups

11,111

11,111

11,111

7473

10,387

11,111

% males

41.3

41.2

41.3

39.0

42.0

41.3

% male groups

40.1

40.1

40.1

38.0

40.9

40.1

Group size; mean (min–max)

11.6 (8–15)

11.1 (2–15)

11.5 (5–15)

11.4 (8–15)

11.6 (8–15)

11.6 (8–15)

Space allowance (\(m^{2} /pig\)); mean (min–max)

0.88 (0.76–1.00)

0.92 (0.76–6.10)

0.89 (0.76–1.83)

0.89 (0.76–1.00)

0.88 (0.76–1.00)

0.88 (0.76–1.00)

% pigs without phenotype (or culled)

4.4

0

3.9

0

3.1

0

% groups with missing phenotypes (or culled)

32.7

0

29.7

0

28.1

0

% pigs culled

3.2

0

1.2

0

0.9

0

% groups with culled pigs

24.8

0

9.4

0

8.3

0

Additive genetic relationship within pens; mean (min–max)

0.17 (0.07–0.55)

0.17 (0.07–0.55)

0.17 (0.07–0.55)

0.17 (0.07–0.49)

0.17 (0.07–0.55)

0.17 (0.07–0.55)

ADG; mean g/d ± sd (min–max)

1017 ± 126 (377–1698)

1017 ± 126 (377–1698)

1017 ± 126 (377–1698)

1020 ± 124 (382–1698)

1017 ± 126 (377–1698)

1017 ± 125 (377–1698)

\(twg_{ij}\): proportion of time that pigs spent with each other within groups; mean (min–max)

0.987 (0.476–1.000)

N/A

0.991 (0.476–1.000)

N/A

0.992 (0.870–1.000)

0.987 (0.476–1.000)

\(sbg_{grp}\): relative space allowance among groups; mean (min–max)

1.011 (0.239–1.204)

N/A

1.012 (0.239–1.204)

N/A

1.025 (0.802–1.204)

1.011 (0.239–1.204)

\(twsbg_{ij}\): the product of \(twg_{ij}\) and \(sbg_{grp}\); mean (min–max)

0.999 (0.114–1.204)

N/A

1.004 (0.114–1.204)

N/A

1.017 (0.720–1.204)

0.999 (0.114–1.204)

  1. Alternative scenarios were: noPhen (individually culled pigs or pigs without phenotypes were omitted), testdays (pigs culled within the first 28% of test days were omitted), noPhenGrp (complete groups with culled pigs or pigs with missing phenotypes omitted), noPhenGrp15 (groups with more than 15% culled pigs or missing phenotypes were omitted), and predPhen (predicted breeding values assigned to pigs without phenotypes including culled pigs)