Table 2 Genomic regions associated with top 0.5% of integrated haplotype score (|iHS|) values and annotated genes for Red Holstein (RH), Red and White Dual-Purpose (RDN) and Meuse-Rhine-Yssel (MRY)
Breed | BTA | Region (Mb) | Average |iHS| | Annotated genes |
|---|---|---|---|---|
RH | 18 | 16.5–18.0 | 3.05 | ZNF423 |
18 | 18.5–19.0 | 3.46 | ADCY7, NKD1, BRD7 | |
18 | 20.0–20.5 | 3.00 |  | |
18 | 21.5–26.0 | 3.32 | FTO, IRX3, IRX6, RPGRIP1L | |
18 | 26.5–30.0 | 3.20 |  | |
18 | 33.0–33.5 | 3.07 |  | |
RDN | 3 | 25.5–26.0 | 2.92 |  |
9 | 59.0–62.5 | 2.78 | BACH2, RARS2, SLC35A1, CFAP206 | |
15 | 35.0–37.0 | 2.62 | KCNJ11, NUCB2 | |
15 | 41.5–42.5 | 2.47 | EIF4G2, SBF2 | |
15 | 44.5–45.0 | 2.46 |  | |
20 | 39.0–41.0 | 2.68 | RAI14, SLC45A2, TTC23L, ADAMTS12 | |
20 | 43.5–45.0 | 2.67 |  | |
26 | 21.5–23.5 | 2.68 | SLF2, LBX1, BTRC | |
27 | 30.5–34.5 | 2.94 | UNC5D, KCNU1 | |
MRY | 1 | 148.5–150.0 | 2.53 | PIGP |
3 | 22.0–22.5 | 2.32 |  | |
3 | 25.5–26.5 | 2.41 |  | |
15 | 29.5–30.0 | 2.34 |  | |
15 | 34.0–37.0 | 2.71 | GRAMD1B | |
15 | 39.0–42.5 | 2.55 | EIF4G2, ZBED5 | |
15 | 59.0–60.5 | 2.50 |  |