Table 3 Genomic regions associated with top 0.5% of cross-population extended haplotype homozygosity (|XPEHH|) scores and annotated genes for the comparison of Red Holstein and Red and White Dual-Purpose (RH and RDN), Red Holstein and Meuse-Rhine-Yssel (RH and MRY) and Red and White Dual-Purpose and Meuse-Rhine-Yssel (RDN and MRY)
XPEHH-analysis between | BTA | Region (Mb) | Average |XPEHH| | Annotated genes |
|---|---|---|---|---|
RH and RDN | 6 | 45.0–45.5 | 3.51 |  |
18 | 14.0–15.5 | 3.87 | MC1R | |
18 | 16.0–19.0 | 4.28 | ZNF423, ADCY7, NKD1, BRD7 | |
18 | 21.5–23.0 | 3.52 | FTO, IRX3, RPGRIP1L | |
18 | 25.0–27.5 | 3.87 |  | |
27 | 32.5–33.0 | 3.65 | ZNF703 | |
27 | 35.0–35.5 | 3.55 |  | |
27 | 36.0–37.5 | 3.88 | GOLGA7, GPAT4 | |
RH and MRY | 15 | 36.0–40.0 | 3.71 |  |
15 | 44.5–45.5 | 3.96 |  | |
18 | 15.0–15.5 | 4.10 | VPS35 | |
18 | 16.0–19.0 | 4.74 | ZNF423, ADCY7, NKD1, BRD7 | |
18 | 21.0–24.0 | 3.82 | FTO, IRX3, RPGRIP1L, IRX6 | |
18 | 25.0–27.0 | 3.88 | NDRG4 | |
RDN and MRY | 1 | 151.5–152.0 | 2.89 |  |
3 | 80.5–81.0 | 3.01 |  | |
15 | 45.5–46.0 | 2.90 | ZNF215 | |
15 | 47.5–48.0 | 2.85 |  | |
15 | 53.5–56.5 | 3.08 | P4HA3, KCNE3, CHRDL2, NEU3 | |
15 | 58.5–60.0 | 3.54 |  | |
15 | 65.5–67.0 | 3.22 |  | |
21 | 12.5–13.0 | 3.18 | MCTP2 | |
21 | 21.0–22.5 | 3.01 | IQGAP1 | |
24 | 21.5–22.0 | 3.11 |  |