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Table2 Imputation accuracy per animal from the Bovine HD BeadChip (~ 777 K) to whole-genome sequence in Nellore cattle using two imputation software and the average of fivefold cross-validation

From: Imputation accuracy to whole-genome sequence in Nellore cattle

 

FImpute3

Minimac4

\({R}^{2}\)

 Mean (SD)

0.94 ± 0.014

0.95 ± 0.011

 Min

0.89

0.91

 Max

0.97

0.98

PERC

 Mean (SD)

96.57 ± 0.76

97.14 ± 0.66

 Min

93.97

94.97

 Max

98.56

98.88

  1. \({R}^{2}\), Squared Pearson’s correlation between observed and imputed genotypes; PERC, percentage of genotypes correctly imputed; SD, standard deviation; Min, minimum value; Max, maximum value