Table 1 Characteristics of systems for ssGBLUP and ssSNPBLUP
From: Convergence behavior of single-step GBLUP and SNPBLUP for different termination criteria
Evaluation | Model\(^{\text{a}}\) | #Equations | #Iterations | Smallest eig. | Largest eig. | \({\kappa }\) \(^{\text{b}}\) |
|---|---|---|---|---|---|---|
FIN | ssGBLUP (10) | 11,373,208 | 4912 | \(3.270*10^{-6}\) | 3.924 | \(1.200*10^{6}\) |
ssGBLUP (30) | 11,373,208 | 4929 | \(3.269*10^{-6}\) | 3.934 | \(1.203*10^{6}\) | |
ssSNPBLUP (10) | 11,627,330 | 5001 | \(3.270*10^{-6}\) | 3.921 | \(1.199*10^{6}\) | |
ssSNPBLUP (30) | 11,627,330 | 4937 | \(3.269*10^{-6}\) | 3.931 | \(1.202*10^{6}\) | |
KAR | ssGBLUP (10) | 26,709,604 | 3902 | \(2.882*10^{-6}\) | 5.062 | \(1.757*10^{6}\) |
ssGBLUP (30) | 26,709,604 | 3968 | \(2.379*10^{-6}\) | 5.063 | \(2.128*10^{6}\) | |
ssSNPBLUP (10) | 26,861,584 | 4037 | \(2.811*10^{-6}\) | 5.062 | \(1.801*10^{6}\) | |
ssSNPBLUP (30) | 26,861,584 | 3988 | \(2.366*10^{-6}\) | 5.063 | \(2.140*10^{6}\) | |
LVD | ssGBLUP (10) | 96,688,714 | 5431 | \(6.248*10^{-6}\) | 8.635 | \(1.382*10^{6}\) |
ssSNPBLUP (10) | 96,916,684 | 5888 | \(5.312*10^{-6}\) | 8.935 | \(1.682*10^{6}\) | |
LVDÂ +Â block | ssGBLUP (10) | 96,688,714 | 1761 | \(1.672*10^{-5}\) | 4.160 | \(2.488*10^{5}\) |
ssGBLUP (30) | 96,688,714 | 1959 | \(1.295*10^{-5}\) | 4.161 | \(3.212*10^{5}\) | |
ssSNPBLUP (10) | 96,916,684 | 2542 | \(1.140*10^{-5}\) | 6.201 | \(5.441*10^{5}\) | |
ssSNPBLUP (30) | 96,916,684 | 2336 | \(1.260*10^{-5}\) | 5.686 | \(4.513*10^{5}\) |