Table 2 Number of iterations needed to reach a difference (for each trait) between intermediate and true estimates of genetic effects (or Legendre polynomials) lower than 1%
From: Convergence behavior of single-step GBLUP and SNPBLUP for different termination criteria
Evaluation | Model\(^{\text{a}}\) | # Iterations\(^{\text{b}}\) | \(e_{r}\) \(^{\text{c}}\) | CR | CD | CK | CM |
|---|---|---|---|---|---|---|---|
FIN | ssGBLUP (10) | 3200 | \(4.432*10^{-3}\) | \(4.295*10^{-8}\) | \(1.134*10^{-5}\) | 0.105 | 0.327 |
ssGBLUP (30) | 3200 | \(4.864*10^{-3}\) | \(3.162*10^{-8}\) | \(1.922*10^{-5}\) | 0.181 | 0.444 | |
ssSNPBLUP (10) | 3200 | \(2.724*10^{-3}\) | \(3.719*10^{-8}\) | \(1.871*10^{-5}\) | 0.155 | 0.448 | |
ssSNPBLUP (30) | 3200 | \(4.600*10^{-3}\) | \(5.168*10^{-8}\) | \(1.536*10^{-5}\) | 0.172 | 0.412 | |
KAR | ssGBLUP (10) | 1800 | \(8.745*10^{-4}\) | \(6.520*10^{-8}\) | \(5.535*10^{-6}\) | 0.431 | 0.877 |
ssGBLUP (30) | 1400 | \(9.561*10^{-4}\) | \(7.483*10^{-7}\) | \(8.794*10^{-6}\) | 1.163 | 2.372 | |
ssSNPBLUP (10) | 1900 | \(8.180*10^{-4}\) | \(6.845*10^{-6}\) | \(4.194*10^{-6}\) | 0.444 | 0.905 | |
ssSNPBLUP (30) | 1500 | \(8.181*10^{-4}\) | \(4.504*10^{-6}\) | \(6.830*10^{-6}\) | 0.802 | 1.636 | |
LON | ssGBLUP (10) | 5200 | \(9.709*10^{-5}\) | \(1.590*10^{-9}\) | \(6.699*10^{-8}\) | 0.006 | 0.023 |
ssSNPBLUP (10) | 5600 | \(1.126*10^{-4}\) | \(6.966*10^{-7}\) | \(5.583*10^{-8}\) | 0.006 | 0.025 | |
LONÂ +Â block | ssGBLUP (10) | 1600 | \(4.178*10^{-5}\) | \(1.868*10^{-8}\) | \(5.976*10^{-7}\) | 0.010 | 0.039 |
ssGBLUP (30) | 1800 | \(5.085*10^{-5}\) | \(5.054*10^{-9}\) | \(5.041*10^{-7}\) | 0.011 | 0.042 | |
ssSNPBLUP (10) | 2000 | \(6.559*10^{-5}\) | \(4.742*10^{-6}\) | \(7.822*10^{-7}\) | 0.021 | 0.083 | |
ssSNPBLUP (30) | 2100 | \(5.314*10^{-5}\) | \(1.372*10^{-6}\) | \(4.656*10^{-7}\) | 0.013 | 0.052 |