From: Convergence behavior of single-step GBLUP and SNPBLUP for different termination criteria
Evaluation | Model\(^{\text{a}}\) | # Iterations\(^{\text{b}}\) | \(e_{r}\) \(^{\text{c}}\) | CR | CD | CK | CM |
---|---|---|---|---|---|---|---|
FIN | ssGBLUP (10) | 2700 | \(9.547*10^{-3}\) | \(1.623*10^{-7}\) | \(4.237*10^{-5}\) | 0.241 | 0.749 |
ssGBLUP (30) | 2600 | \(1.282*10^{-2}\) | \(7.813*10^{-8}\) | \(3.195*10^{-5}\) | 0.327 | 0.802 | |
ssSNPBLUP (10) | 2500 | \(9.372*10^{-3}\) | \(1.274*10^{-7}\) | \(5.587*10^{-5}\) | 0.530 | 1.533 | |
ssSNPBLUP (30) | 2700 | \(1.069*10^{-2}\) | \(2.117*10^{-7}\) | \(4.144*10^{-5}\) | 0.335 | 0.805 | |
KAR | ssGBLUP (10) | 1100 | \(3.460*10^{-3}\) | \(3.293*10^{-7}\) | \(3.967*10^{-5}\) | 2.595 | 5.284 |
ssGBLUP (30) | 1100 | \(3.675*10^{-3}\) | \(1.063*10^{-6}\) | \(2.904*10^{-5}\) | 4.096 | 8.354 | |
ssSNPBLUP (10) | 1100 | \(4.115*10^{-3}\) | \(1.851*10^{-5}\) | \(1.683*10^{-5}\) | 2.737 | 5.572 | |
ssSNPBLUP (30) | 1100 | \(4.039*10^{-3}\) | \(1.135*10^{-5}\) | \(2.435*10^{-5}\) | 4.189 | 8.544 | |
LON | ssGBLUP (10) | 3900 | \(1.607*10^{-4}\) | \(1.540*10^{-8}\) | \(6.789*10^{-7}\) | 0.060 | 0.235 |
ssSNPBLUP (10) | 4100 | \(1.974*10^{-4}\) | \(1.849*10^{-6}\) | \(5.344*10^{-7}\) | 0.069 | 0.267 | |
LONÂ +Â block | ssGBLUP (10) | 1300 | \(1.476*10^{-4}\) | \(2.273*10^{-8}\) | \(2.121*10^{-6}\) | 0.040 | 0.154 |
ssGBLUP (30) | 1500 | \(1.177*10^{-4}\) | \(1.987*10^{-8}\) | \(2.003*10^{-6}\) | 0.043 | 0.165 | |
ssSNPBLUP (10) | 1600 | \(1.393*10^{-4}\) | \(1.549*10^{-5}\) | \(2.839*10^{-6}\) | 0.073 | 0.282 | |
ssSNPBLUP (30) | 1800 | \(9.499*10^{-5}\) | \(5.961*10^{-6}\) | \(1.352*10^{-6}\) | 0.039 | 0.153 |