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Table 1 List of miRNA polymorphisms genotyped in a population of Duroc pigs (N = 345, Lipgen population)

From: Variability in porcine microRNA genes and its association with mRNA expression and lipid phenotypes

microRNA

SSCa

Start (bp)

End (bp)

Strand

SNP

Type

Alt. alleleb

Frequencyc

ssc-miR-339

1

164,025,972

164,026,057

−

rs81349391

Apical loop

G

0.4138

ssc-miR-130a

2

13,296,695

13,296,773

−

rs344472188

Apical loop

G

0.1364

ssc-miR-23a

2

65,308,117

65,308,186

+

rs333787816

Precursor stem

C

0.5398

ssc-miR-30d

4

6,948,669

6,948,747

+

rs340704946

Precursor stem

G

0.4762

ssc-miR-371

6

56,427,208

56,427,285

−

rs320008166

Precursor stem

C

0.2955

ssc-miR-429

6

63,491,921

63,492,001

+

rs323906663

Precursor stem

A

0.2955

ssc-miR-326

9

9,581,944

9,582,034

−

rs319154814

Apical loop

A

0.5852

ssc-miR-34c

9

39,280,278

39,280,357

+

rs321151601

Mature region

A

0.0805

ssc-miR-378–2

12

36,947,443

36,947,510

+

rs341950320

Precursor stem

A

0.1176

ssc-miR-15b

13

100,083,172

100,083,269

+

rs334680106

Precursor stem

T

0.2706

ssc-miR-486

17

10,758,818

10,758,899

−

rs335924546

Precursor stem

T

0.3391

ssc-miR-335

18

18,341,568

18,341,659

−

rs334590580

Precursor stem

C

0.1875

  1. aSSC: porcine chromosome
  2. bAlt. allele: alternative allele of the genotyped SNP
  3. cFrequency: frequency of the alternative allele in the Lipgen population