Table 2 Number of significant associations between the 12 genotyped miRNA SNPs and the whole set of mRNAs expressed in the gluteus medius (GM) skeletal muscle (N = 89) and liver (N = 87) tissue samples from Duroc pigs
From: Variability in porcine microRNA genes and its association with mRNA expression and lipid phenotypes
SNP (chromosome position) | Type | Significant associations | |||
|---|---|---|---|---|---|
GM (P-value < 0.05) | LIVER (P-value < 0.05) | GM (q-value < 0.1) | LIVER (q-value < 0.1) | ||
rs81349391 (1:164,026,014 bp) | ssc-miR-339 apical loop (A/G) | 456 | 356 | 0 | 0 |
rs344472188 (2:13,296,736 bp) | ssc-miR-130a apical loop (A/G) | 320 | 1252 | 0 | 1 |
rs333787816 (2:65,308,181 bp) | ssc-miR-23a precursor stem (T/C) | 2075 | 751 | 6 | 1 |
rs340704946 (4:6,948,743 bp) | ssc-miR-30d precursor stem (A/G) | 563 | 398 | 0 | 0 |
rs320008166 (6:56,427,227 bp) | ssc-miR-371 precursor stem (T/C) | 270 | 365 | 2 | 8 |
rs323906663 (6:63,491,948 bp) | ssc-miR-429 precursor stem (G/A) | 328 | 406 | 2 | 8 |
rs319154814 (9:9,581,989 bp) | ssc-miR-326 apical loop (G/A) | 372 | 2400 | 0 | 0 |
rs321151601 (9:39,280,312 bp) | ssc-miR-34c mature region (C/A) | 947 | 392 | 0 | 0 |
rs341950320 (12:36,947,510 bp) | ssc-miR-378-2 precursor stem (G/A) | 792 | 322 | 0 | 0 |
rs334680106 (13:100,083,229 bp) | ssc-miR-15b precursor stem (C/T) | 277 | 205 | 0 | 0 |
rs335924546 (17:10,758,828 bp) | ssc-miR-486 precursor stem (C/T) | 1232 | 171 | 0 | 0 |
rs334590580 (18:18,341,582 bp) | ssc-miR-335 precursor stem (T/C) | 665 | 219 | 1 | 0 |