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Table 3 Most probable candidate genes affecting viability in mouse knockout models and associated with mammalian autosomal recessive disorders

From: Identification of homozygous haplotypes carrying putative recessive lethal mutations that compromise fertility traits in French Lacaune dairy sheep

Haplotype

Gene namea

Gene description

Mammalian recessive disorderb

LDHH1

MAGI2

Membrane associated guanylate kinase, WW and PDZ domain containing 2

Nephrotic syndrome

PMPCB

Peptidase, mitochondrial processing beta subunit

Multiple mitochondrial dysfunctions syndrome

RELN†*

Reelin

Lissencephaly and cerebellar hypoplasia

LDHH2

IDI1

Isopentenyl-diphosphate delta isomerase 1

Zellweger syndrome and neonatal adrenoleukodystrophy

PRNP

Major prion protein

Spongiform encephalopathy

PCNA*

Proliferating cell nuclear antigen

Ataxia-telangiectasia-like disorder

FERMT1

Fermitin family member 1

Kindler syndrome

LDHH3

POMC*

Proopiomelanocortin

Obesity, adrenal insufficiency

HADHA, HADHB

Hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha/beta

Long-chain 3-hydroxyacyl-CoA dehydrogenase deficiency, trifunctional protein deficiency with myopathy and neuropathy

CAD

Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase

Abortion; epileptic encephalopathy, early infantile

EIF2B4

Eukaryotic translation initiation factor 2B subunit delta

Leukoencephalopathy, ovarioleukodystrophy

IFT172

Intraflagellar transport 172

Retinitis pigmentosa, short-rib thoracic dysplasia ± polydactyly

LDHH4–5

HOXC13*

Homeobox C13

Ectodermal dysplasia

KRT8*

Keratin 8

Cryptogenic cirrhosis

SCN8A*

Sodium voltage-gated channel alpha subunit 8

Spinocerebellar ataxia

LDHH6

WNT1*

Wnt family member 1

Osteogenesis imperfecta, type XV

CCDC65*

Coiled-coil domain containing 65

Primary ciliary dyskinesia

PFKM*

Phosphofructokinase, muscle

Glycogen storage disease VII

LDHH7

TLL1*

Tolloid like 1

Heart malformation

LDHH8-9–10

FAH

Fumarylacetoacetate hydrolase

Tyrosinemia

ARNT2*

Aryl hydrocarbon receptor nuclear translocator 2

Webb-Dattani syndrome

MPI

Mannose phosphate isomerase

Congenital disorder of glycosylation, type Ib

CYP1A2*

Cytochrome P450 family 1 subfamily A member 2

Metabolizer of a cognitive enhancer

STRA6

Stimulated by retinoic acid 6

Microphthalmia

LDHH11

CRADD

CASP2 and RIPK1 domain containing adaptor with death domain

Mental retardation, with variant lissencephaly

CEP83

Centrosomal protein 83

Nephronophthisis

  1. aHomozygous lethal (complete penetrance) and homozygous sub-viable* (incomplete penetrance) genes affecting developmental stages reported in knockout databases (IMPC and/or MGI)
  2. bMammalian autosomal recessive disorders reported in OMIM and/or OMIA databases