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Table 2 Some descriptive statisticsa on SNPs and QTL for each pure breed in the base population (Generation 0–G0)

From: Genomic prediction using a reference population of multiple pure breeds and admixed individuals

  HOLb RED JER
Number of fixed QTL for the reference (alternative) allele 9 (0) 5 (0) 58 (1)
Number of fixed SNPs for the reference (alternative) allele 564 (2) 385 (14) 2281 (286)
Number of breed-specific QTL 3 4 1
Number of breed-specific SNPs 261 356 50
Average MAF of segregating QTL 0.17 0.16 0.16
Average MAF of segregating SNPs 0.23 0.23 0.22
  1. aAverage over 10 replicates
  2. bHOL, RED and JER: Danish Holstein, Swedish Red and Danish Jersey dairy cattle, respectively