From: Genomic prediction using a reference population of multiple pure breeds and admixed individuals
 | HOLb | RED | JER |
---|---|---|---|
Number of fixed QTL for the reference (alternative) allele | 9 (0) | 5 (0) | 58 (1) |
Number of fixed SNPs for the reference (alternative) allele | 564 (2) | 385 (14) | 2281 (286) |
Number of breed-specific QTL | 3 | 4 | 1 |
Number of breed-specific SNPs | 261 | 356 | 50 |
Average MAF of segregating QTL | 0.17 | 0.16 | 0.16 |
Average MAF of segregating SNPs | 0.23 | 0.23 | 0.22 |