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Table 3 Genome-wide association study hits for genome-wide recombination rate, with position of the most significant SNP, additive genetic variance explained by the lead (most significant) SNP, and frequency of the allele associated with the higher recombination rate

From: Genetic variation in recombination rate in the pig

Chr Sex Line Lead SNP position Gene closest to lead SNP Genetic variance explained Allele frequency
1 Female 6 252,547,401 SHOC1 (ENSSSCG00000005463) 0.10 0.57
8 Female 1 2,253,270 lncRNA ENSSSCG00000047394 0.08 0.90
8 Female 2 75,256 PDE6B (ENSSSCG00000036645) 0.60 0.53
8 Female 3 226,298 CPLX1 (ENSSSCG00000037527) 0.41 0.70
8 Male 3 226,298 CPLX1 (ENSSSCG00000037527) 0.44 0.74
8 Female 5 259,617 GAK1 (ENSSSCG00000021289) 0.07 0.27
8 Female 6 259,617 GAK1 (ENSSSCG00000021289) 0.12 0.74
8 Female 9 75,256 PDE6B (ENSSSCG00000036645) 0.14 0.12
8 Male 9 1,283,621 ZFYVE28 (ENSSSCG00000008689) 0.22 0.41
17 Female 1 59,968,884 FAM217B (ENSSSCG00000007531) 0.16 0.78
  1. Chr chromosome number