Table 3 Genome-wide association study hits for genome-wide recombination rate, with position of the most significant SNP, additive genetic variance explained by the lead (most significant) SNP, and frequency of the allele associated with the higher recombination rate
Chr | Sex | Line | Lead SNP position | Gene closest to lead SNP | Genetic variance explained | Allele frequency |
|---|---|---|---|---|---|---|
1 | Female | 6 | 252,547,401 | SHOC1 (ENSSSCG00000005463) | 0.10 | 0.57 |
8 | Female | 1 | 2,253,270 | lncRNA ENSSSCG00000047394 | 0.08 | 0.90 |
8 | Female | 2 | 75,256 | PDE6B (ENSSSCG00000036645) | 0.60 | 0.53 |
8 | Female | 3 | 226,298 | CPLX1 (ENSSSCG00000037527) | 0.41 | 0.70 |
8 | Male | 3 | 226,298 | CPLX1 (ENSSSCG00000037527) | 0.44 | 0.74 |
8 | Female | 5 | 259,617 | GAK1 (ENSSSCG00000021289) | 0.07 | 0.27 |
8 | Female | 6 | 259,617 | GAK1 (ENSSSCG00000021289) | 0.12 | 0.74 |
8 | Female | 9 | 75,256 | PDE6B (ENSSSCG00000036645) | 0.14 | 0.12 |
8 | Male | 9 | 1,283,621 | ZFYVE28 (ENSSSCG00000008689) | 0.22 | 0.41 |
17 | Female | 1 | 59,968,884 | FAM217B (ENSSSCG00000007531) | 0.16 | 0.78 |