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Table 2 Functional mutations (INDEL or SNVs) fixed in one of the rabbit lines and absent in the other line

From: Selection for environmental variance of litter size in rabbits involves genes in pathways controlling animal resilience

OCUa

bpb

Lowc

Highd

Region

Gene

Mutationh

9

48,280,960

1/1

2/2

3ʹUTR

MC2R

3-bp deletioni

11

56,199,847

0/0e

1/1f

Frameshift

TTC23L

2-bp deletion

12

138,684,799

1/1

0/0

Frameshift

ENSOCUG00000031631

2-bp deletion

12

138,685,173

1/1

0/0

Frameshift

ENSOCUG00000031631

1-bp insertion

12

138,685,179

1/1

0/0

Frameshift

ENSOCUG00000031631

2-bp deletion

14

33,195,918

1/1

2/2g

3ʹUTR

ENSOCUG00000006264

25-bp deletioni

15

4,723,998

1/1

0/0

3ʹUTR

SLC18A1

4-bp deletion

19

40,686,575

0/0

1/1

5ʹUTR

FBXL20

90-bp insertion

19

43,006,505

0/0

1/1

Frameshift

GHDC

2-bp deletion

19

44,276,359

1/1

0/0

3ʹUTR

CD300LG

8-bp deletion

  1. aOryctolagus cuniculus (OCU) chromosome
  2. bFunctional mutation location in base pairs
  3. cGenotype of line with low VE of LS
  4. dGenotype of line with high VE of LS
  5. e0/0 indicates that the functional mutation is the homozygous for the reference allele
  6. f1/1 indicates that the functional mutation is homozygous for the alternative allele
  7. g2/2 indicates that the functional mutation is homozygous for a new allele not present in the reference genome
  8. hAll INDELs were marked according to the reference allele of OryCun v2.0.103
  9. iWith reference to the alternative allele of OryCun v2.0.103