From: Simulation studies to optimize genomic selection in honey bees
Number of genotyped queens per year (\({{\varvec{n}}}_{{\varvec{g}}{\varvec{p}}{\varvec{y}}}\)) | Proportion of DPQ selected by GPS compared to all DPQ deployed on mating stations (\({{\varvec{p}}}_{{\varvec{D}}{\varvec{P}}{\varvec{Q}}}\)) | Selection intensity of GPS on DPQ (\({{\varvec{i}}}_{{\varvec{D}}{\varvec{P}}{\varvec{Q}}}^{{\varvec{G}}{\varvec{P}}{\varvec{S}}}\)) | Proportion of BQ selected by GPS compared to all phenotyped BQ (\({{\varvec{p}}}_{{\varvec{B}}{\varvec{Q}}}\)) | Selection intensity of GPS on BQ (\({{\varvec{i}}}_{{\varvec{B}}{\varvec{Q}}}^{{\varvec{G}}{\varvec{P}}{\varvec{S}}}\)) | Number of BQ in the reference population (5Â years in total) | Proportion of BQ in the reference population (\({{\varvec{p}}}_{{\varvec{r}}{\varvec{e}}{\varvec{f}}}\)) | Breeding value estimation method | Genetic gain \({{\varvec{R}}}_{{\varvec{G}}{\varvec{S}}}\) | |
---|---|---|---|---|---|---|---|---|---|
MOD | HGC | ||||||||
0 | 0 | 0 | 0 | 0 | 0 | 0 | PBLUP | 0.8751 | 0.5286 |
500 | 0.4 | 0.7979 | 0.15 | 0.2998 | 750 | 0.15 | ssGBLUPBQ | 0.9497 | 0.5715 |
500 | 0.46 | 0.7979 | 0.11 | 0.2998 | 550 | 0.11 | ssGBLUPBQ | 0.9492 | 0.5725 |
1000 | 1 | 0.7454 | 0.205 | 0.2998 | 1045 | 0.209 | ssGBLUPDPQ+BQ | 1.0909 | 0.6559 |
1000 | 1 | 0.8454 | 0.125 | 0.2998 | 625 | 0.125 | ssGBLUPDPQ+BQ | 1.0878 | 0.6567 |
1500 | 1 | 0.8454 | 0.46 | 0.4759 | 2330 | 0.466 | ssGBLUPDPQ+BQ | 1.2169 | 0.7344 |
1500 | 1 | 0.8889 | 0.5 | 0.2998 | 2500 | 0.5 | ssGBLUPDPQ+BQ | 1.2167 | 0.7353 |
2000 | 1 | 0.8889 | 0.785 | 0.4759 | 3930 | 0.786 | ssGBLUPDPQ+BQ | 1.3403 | 0.8091 |
2500 | 1 | 1.0324 | 1 | 0.4759 | 5000 | 1 | ssGBLUPDPQ+BQ | 1.4668 | 0.8831 |
3000 | 1 | 1.0908 | 1 | 0.7111 | 5000 | 1 | ssGBLUPDPQ+BQ | 1.5652 | 0.9391 |
3500 | 1 | 1.2322 | 1 | 0.7979 | 5000 | 1 | ssGBLUPDPQ+BQ | 1.6416 | 0.9828 |
4000 | 1 | 1.3401 | 1 | 0.872 | 5000 | 1 | ssGBLUPDPQ+BQ | 1.7026 | 1.0175 |