Table 4 Candidate genes for breast muscle weight and IMF contents
Trait | Candidate gene | Position | Method | Effect (SE)a | Module |
|---|---|---|---|---|---|
BMW | PABPC1 | chr2:128,496,930–128,511,621 | EN-1SE | − 1.46E−02 (6.90E−03) | Black |
LASSO-1SE | − 2.70E−02 (2.70E−02) | ||||
BMW | SCAF4 | chr1:106,003,107–106,047,331 | EN-1SE | − 9.20E−03 (4.38E−03) | Pink |
BMW | AMY1A | chr8:11,450,028–11,459,763 | EN-1SE | 1.42E−02 (7.23E−03) | Black |
LASSO-1SE | 2.93E−02 (2.96E−02) | ||||
BMW | ATG9A | chr7:22,223,873–22,232,130 | EN-1SE | − 4.27E-03 (2.27E−03) | Blue |
BMW | SERPINB6L | chr2:67,630,807–67,640,267 | EN-1SE | 8.84E−03 (4.75E−03) | Pink |
LASSO-1SE | 7.09E−06 (1.75E−02) | ||||
BMW | RNPS1 | chr14:14,178,476–14,188,562 | EN-1SE | − 6.66E−03 (4.11E−03) | Pink |
BMW | EDC3 | chr10:2,903,180–2,929,046 | EN-1SE | − 4.88E−03 (3.08E−03) | Pink |
BMW | NSD1 | chr13:10,923,976–10,979,820 | EN-1SE | − 4.71E-03 (2.99E−03) | Pink |
BMW | EEF2 | chr28:1,553,588–1,561,522 | EN-1SE | − 5.95E−03 (3.91E−03) | Blue |
BMW | TBC1D16 | chr18:9,562,960–9,588,413 | EN-1SE | 9.20E−03 (6.21E−03) | – |
BMW | GOLM1 | chr35:40,775,848–40,812,641 | EN-1SE | 7.40E−03 (5.65E−03) | – |
BMW | PTPN4 | chr7:25,316,975–25,421,700 | EN-1SE | − 5.52E−03 (4.30E−03) | Green |
BMW | FGFR1 | chr22:2,646,704–2,665,806 | EN-1SE | − 7.92E−03 (6.30E−03) | – |
BMW | FBP2 | chr35:41,434,016–41,454,580 | EN-1SE | 4.99E−03 (3.99E−03) | Black |
BMW | CETN1 | chr4: 11,283,946–11,288,350 | EN-1SE | 4.95E−03 (4.01E−03) | Turquoise |
BMW | SCYL3 | chr8:5,441,379–5,454,438 | EN-1SE | − 4.33E−03 (3.52E−03) | Pink |
BMW | TLK2 | chr27:4,774,305–4,818,359 | EN-1SE | − 2.89E−03 (2.44E−03) | Pink |
BMW | CMPK1 | chr8:22,291,575–22,304,067 | EN-1SE | 3.73E−03 (3.20E−03) | Blue |
BMW | EIF4EBP1 | chr22:2,560,354–2,564,665 | EN-1SE | − 4.23E−03 (4.10E−03) | Blue |
BMW | PFKP | chr2:11,439,905–11,481,490 | EN-1SE | 4.29E−03 (4.77E−03) | Yellow |
BMW | PA2G4 | chr33:7,033,372–7,044,838 | EN-1SE | − 2.81E−03 (3.53E−03) | Cyan |
BMW | MECP2 | chr30:360,508–372,669 | EN-1SE | − 2.24E−03 (2.83E−03) | Blue |
BMW | EP300 | chr1:49,778,616–49,836,401 | EN-1SE | − 1.63E−03 (2.19E−03) | Pink |
BMW | LOC107052698 | chr2:99,744,162–99,754,138 | EN-1SE | 2.98E−03 (4.37E−03) | – |
BMW | TCTN1 | chr15:6,275,491–6,287,845 | EN-1SE | 2.95E−03 (4.44E−03) | Pink |
BMW | FOXD3 | chr8:28,132,659–28,134,130 | EN-1SE | − 2.78E−03 (4.38E−03) | Blue |
LMM | − 3.86E−01 (6.73E−03) (p = 1.90E−08) | ||||
BMW | SRPK2 | chr1:13,957,491–14,095,954 | EN-1SE | 2.62E−03 (4.35E−03) | – |
BMW | HNRNPA1 | chr33:7,724,007–7,730,306 | EN-1SE | − 1.07E-03 (2.24E−03) | Blue |
BMW | AP3B2 | chr10:1,820,119–1,831,108 | EN-1SE | 3.30E−03 (7.23E−03) | – |
BMW | GTF2IRD1 | chr19:2,866,852–2,916,929 | EN-1SE | − 1.43E−03 (3.41E−03) | Blue |
BMW | AKAP5 | chr5:53,099,294–53,106,255 | EN-1SE | 1.95E−03 (4.84E−03) | Black |
BMW | PURG | chr4:34,642,974–34,668,274 | EN-1SE | 1.62E−03 (4.22E−03) | – |
BMW | C5H15orf57 | chr5:1,125,535–1,132,713 | EN-1SE | 1.38E−03 (4.10E−03) | – |
BMW | BDH2 | chr4:60,973,522–60,987,649 | EN-1SE | 1.17E−03 (3.85E−03) | Pink |
BMW | CEBPG | chr11:10,311,180–10,315,686 | EN-1SE | − 5.22E−04 (2.14E−03) | Brown |
BMW | HELZ | chr18:7,145,227–7,219,254 | EN-1SE | − 9.49E−04 (4.09E−03) | Blue |
BMW | UBE2O | chr18:4,379,218–4,428,651 | EN-1SE | − 2.71E−04 (1.40E−03) | Pink |
BMW | COQ7 | chr14:8,869,571–8,882,281 | EN-1SE | 3.96E−04 (2.39E−03) | Black |
BMW | MSANTD3 | chr2:89,075,200–89,090,503 | EN-1SE | 4.85E−04 (4.01E−03) | Midnightblue |
BMW | VEZF1 | chr19:8,866,657–8,883,692 | EN-1SE | − 2.47E−04 (2.49E−03) | Blue |
BMW | UBP1 | chr2:44,569,864–44,605,832 | EN-1SE | − 1.48E−04 (2.29E−03) | Pink |
BMW | MZT1 | chr1:157,641,451–157,646,198 | EN-1SE | 1.25E−04 (2.24E−03) | Turquoise |
BMW | RBL2 | chr11:4,992,998–5,010,973 | EN-1SE | − 3.24E−05 (2.34E−03) | Pink |
IMF | THRA | chr27:7,152,162- 7,163,448 | EN-1SE | − 1.04E−16 (9.23E−03) | MEBrown |
LMM | − 2.77E−01 (5.30E−02) (p = 2.89E−07) | ||||
TG | COMMD4 | chr10:3,091,477–3,093,335 | LMM | 2.84E−01 (5.97E−02) (p = 2.87E−06) | MEBrown |
TG | HIST1H110 | chr1:48,103,557–48,104,467 | LMM | 2.31E−01 (4.89E−02) (p = 3.22E−06) | – |
CHO | PEA15L1 | chr23:6,137,230–6,144,560 | EN-1SE | 1.17E−17 (3.51E−03) | MEGreen |
PL | SCFD1 | chr5:34,370,974–34,415,640 | EN-1SE | 1.06E−16 (1.21E−02) | MEYellow |