From: Evidence for and localization of proposed causative variants in cattle and pig genomes
Gene (variants) | Trait (species) | Variant type | Variant codes | Effect of alleles | Position (Sscrofa11.1) | Variant Acc | OMIA Acc | Original citation |
---|---|---|---|---|---|---|---|---|
IGF2 (g.1483817T > C) | Muscle growth | Intronic SNV | NC_010444.4:g.1483817 T > C | T has higher growth and lean meat production | 2:1,483,817 |  |  | [74] |
MC4R (p.Asp298Asn) | Growth and fatness | Missense SNV | NC_010443.5:g.160773437G > A ENSSSCP00000074588:p.Asp298Asn | A has faster growth and more fat | 1:160,773,437 | rs81219178 |  | [82] |
MSTN (p.Glu274*) | Leg weakness | Stop gain SNV | NC_010457.5:g.94623834C > A ENSSSCP00000017001:p.Glu274* | A has leg weakness | 15:94,623,834 |  | OMIA 002,161–9823 |  |
NR6A1 (p.Leu192Pro) | Vertebrae number | Missense SNV | NC_010443.5:g.265347265A > G ENSSSCP00000005986:p.Leu192Pro | A has higher vertebrate number | 1:265,347,265 | rs326780270 |  | [97] |
PHKG1 (g.16830320C > A) | Glycogen content and meat quality | Splice region SNV | NC_010445.4:g.16830320C > A | A has higher glycogen content | 3:16,830,320 | rs330928088 |  | [103] |
PRKAG3 (p.Arg250Gln) | Glycogen content and meat quality | Missense SNV | NC_010457.5:g.120863533C > T ENSSSCP00000017163:p.Arg250Gln | T has high glycogen content | 15:120,863,533 | rs1109104772 | OMIA 001,085–9823 | [104] |
RYR1 (p.Arg651Cys) | Malignant hypothermia | Missense SNV | NC_010448.4:g.47357966 T > C NP_001001534.1:p.Arg651Cys | T is halothane sensitive | 6:47,357,966 | rs344435545 | OMIA 000,621–9823 | |
SYNGR2 (p.Cys63Arg) | Porcine circovirus viral load | Missense SNV | NC_010454.4:g3797515A > C ENSSSCP00000041695:p.Cys63Arg | A has lower viral load | 12:3,797,515 |  |  | [118] |
VRTN (g.97614602A > C) | Vertebrae number | Noncoding SNV | NC_010449.5:g.97614602A > C | C has more vertebrae | 7:97,614,602 | rs709317845 |  | [102] |
(g.97615879_97615880ins) | Â | Noncoding indel | NC_010449.5:g.97615879_97615880ins[AB554652.1:20312_20602] | Insertion has more vertebrae | 7:97,615,880 | Â | Â | Â |