Table 1 Summary of the genome-wide associations
From: A genome-wide association analysis for body weight at 35 days measured on 137,343 broiler chickens
GGA | Number of SNPs | Interval (Mb) | P-value (range) | P-valueFDR (range) | Top SNP location (bp) | Top SNP effect (SE) | Top SNP MAF |
|---|---|---|---|---|---|---|---|
1a | 2 | 54.68–54.76 | 4.90 × 10–8 | 3.49 × 10–4 | 54,681,614 | − 0.64 (0.12) | 0.18 |
1b | 1 | / | 4.14 × 10–7 | 3.06 × 10–4 | 134,493,403 | − 0.87 (0.16) | 0.11 |
1c | 1 | / | 1.42 × 10–6 | 6.18 × 10–3 | 184,458,596 | 0.76 (0.16) | 0.11 |
1d | 1 | / | 8.09 × 10–7 | 3.73 × 10–3 | 193,808,533 | − 0.44 (0.09) | 0.36 |
2a | 1 | / | 1.31 × 10–8 | 1.12 × 10–4 | 103,154,441 | 0.44 (0.08) | 0.41 |
2b | 2 | 110.94–11.28 | (7.40 × 10–7–6.17 × 10–7) | (3.51 × 10–3–3.06 × 10–3) | 111,281,574 | 0.57 (0.11) | 0.49 |
3 | 1 | / | 2.39 × 10–6 | 9.78 × 10–3 | 16,964,703 | − 0.71 (0.15) | 0.16 |
4a | 1 | / | 4.96 × 10–7 | 2.56 × 10–3 | 44,839,695 | 0.67 (0.11) | 0.34 |
4b | 1 | / | 7.24 × 10–7 | 3.51 × 10–3 | 49,798,002 | − 0.64 (0.13) | 0.49 |
4c | 1 | / | 7.41 × 10–9 | 6.92 × 10–5 | 52,734,745 | − 0.67 (0.12) | 0.31 |
4d | 7 | 59.55–3.00 | (2.12 × 10–6–1.51 × 10–11) | (8.94 × 10–2–3.11 × 10–7) | 62,900,071 | 0.89 (0.13) | 0.08 |
4e | 45 | 65.67–66.31 | (2.23 × 10–6–6.47 × 10–42) | (9.21 × 10–3–2.54 × 10–36) | aProprietary | 1.52 (0.11) | 0.33 |
8a | 1 | / | 6.09 × 10–9 | 5.97 × 10–5 | 22,999,302 | − 1.05 (0.18) | 0.08 |
8b | 1 | / | 2.64 × 10–14 | 1.15 × 10–9 | 27,225,215 | 0.80 (0.11) | 0.16 |
8c | 1 | / | 9.16 × 10–11 | 1.38 × 10–6 | 28,197,569 | − 1.35 (0.21) | 0.22 |
10 | 1 | / | 8.37 × 10–7 | 3.98 × 10–3 | 1,870,252 | − 0.42 (0.09) | 0.39 |
11 | 1 | / | 1.06 × 10–8 | 9.20 × 10–5 | 16,452,035 | 0.41 (0.07) | 0.43 |
12 | 1 | / | 1.28 × 10–7 | 7.48 × 10–4 | 1,843,370 | 0.52 (0.10) | 0.32 |
13a | 6 | 16.31–16.48 | (1.37 × 10–6–4.22 × 10–10) | (6.03 × 10–3–5.17 × 10–6) | 16,333,496 | 1.00 (0.16) | 0.19 |
13b | 5 | 16.71–16.87 | (2.17 × 10–6–2.11 × 10–10) | (8.99 × 10–3–2.85 × 10–6) | 16,706,244 | 0.79 (0.12) | 0.46 |
14a | 4 | 13.14–13.94 | (2.23 × 10–7–2.40 × 10–8) | (1.23 × 10–3–1.96 × 10–4) | 13,208,763 | − 0.33 (0.06) | 0.50 |
14b | 5 | 14.50–15.06 | (9.20 × 10–9–6.34 × 10–13) | (8.39 × 10–5–1.66 × 10–8) | 14,496,748 | − 0.53 (0.07) | 0.30 |
15 | 2 | 11.61–12.34 | (7.43 × 10–7–2.39 × 10–9) | (3.51 × 10–3–2.67 × 10–5) | 12,338,040 | 0.32 (0.06) | 0.26 |
19 | 1 | / | 6.64 × 10–9 | 6.35 × 10–5 | 8,618,001 | − 0.83 (0.14) | 0.25 |
27 | 3 | 4.11–4.96 | (1.65 × 10–6–2.97 × 10–9) | (7.10 × 10–3–3.15 × 10–5) | 4,955,965 | 0.40 (0.07) | 0.31 |