A genome-wide association analysis for body weight at 35 days measured on 137,343 broiler chickens

Table 3 List of genes associated with the significant SNPs

GGA	Location (Mb)	Gene name
1a	54.68–54.76	CHST11_IN, TXNRD1_IN, IGF1_1Mb
1b	134,493,403	C2orf49_3UR, FHL2_DS, TGFBRAP1_1Mb
1c	184,458,596	MTMR2_IN
1d	193,808,533	STIM1_IN, DGAT2_1Mb
2a	103,154,441	IMPACT_CL, HRH4_CL
2b	110.94–111.28	PLAG1_SYN, IMPAD1_DS
3	16,964,703	FBXO28_SYN
4a	44,839,695	FGF5_1Mb, BMP3_1Mb
4b	49,798,002	SLC4A4_DS, GC_1Mb
4c	52,734,745	SPATA5_1Mb, ADAD1_1Mb, TRPC3_1Mb
4d	59.55–63.00	METAP1_IN, PPP3CA_IN, ASAH1_3UR, FGF20_1Mb
4e	65.67–66.31	SPATA18_DS, SGCB_DS, DCUN1D4_IN, CWH43_IN, OCIAD1_IN, SLAIN2_IN, TEC_IN, NFXL1_IN, CORIN_IN
8a	22,999,302	EPS15_IN
8b	27,225,215	LEPROT_3UR, JAK1_1Mb, LEPR_1Mb
8c	28,197,569	NEGR1_CL
10	1,870,252	PPCDC_IN
11	16,452,035	CRISPLD2_CL, HNF4beta_CL
12	1,843,370	MAPKAPK3_IN
13a	16.31–16.48	KIF3A_US, SEPT8_IN, CCNI2_IN, AFF4_IN
13b	16.71–16.87	ARHGAP26_IN, NR3C1_IN, NDF1P1_1Mb, FGF1_1Mb,
14a	13.14–13.94	STUB1_US, RHBDL1_IN, JMJD8_DS, SPSB3_IN, NUBP2_US, HN1L_DS, IGFALS_1Mb
14b	14.50–15.06	PDIA2_IN, C16orf62_IN, DNAH3_IN, ZP2_MS
15	11.61–12.34	MED13L_IN, TBX5_IN
19	8,618,001	SYNRG_IN, TBX2_1Mb, HNF1B_1Mb
27	4.11–4.96	RPL19_US, CACNB1_US, DNAJC7_IN, ATP6V0A1_IN, STAT3_1Mb, STATB5_1Mb

GGA = Gallus gallus autosome chromosome; Location = the chromosome region spanned by the significant SNPs (in base pairs); Gene name = names of associated genes; IN = intron variant; SYN = synonymous variant; DS = downstream gene variant; US = upstream gene variant; 3US = 3ʹ untranslated region; MS = missense variant; CL = closest gene (in the case of absence of genes within 5 kb from the top SNP); 1 Mb = important genes located within a 1-Mb range from the top SNP, as determined by the literature

ISSN: 1297-9686