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Table 3 List of genes associated with the significant SNPs

From: A genome-wide association analysis for body weight at 35 days measured on 137,343 broiler chickens

GGA Location (Mb) Gene name
1a 54.68–54.76 CHST11IN, TXNRD1IN, IGF11Mb
1b 134,493,403 C2orf493UR, FHL2DS, TGFBRAP11Mb
1c 184,458,596 MTMR2IN
1d 193,808,533 STIM1IN, DGAT21Mb
2a 103,154,441 IMPACTCL, HRH4CL
2b 110.94–111.28 PLAG1SYN, IMPAD1DS
3 16,964,703 FBXO28SYN
4a 44,839,695 FGF51Mb, BMP31Mb
4b 49,798,002 SLC4A4DS, GC1Mb
4c 52,734,745 SPATA51Mb, ADAD11Mb, TRPC31Mb
4d 59.55–63.00 METAP1IN, PPP3CAIN, ASAH13UR, FGF201Mb
4e 65.67–66.31 SPATA18DS, SGCBDS, DCUN1D4IN, CWH43IN, OCIAD1IN, SLAIN2IN, TECIN, NFXL1IN, CORININ
8a 22,999,302 EPS15IN
8b 27,225,215 LEPROT3UR, JAK11Mb, LEPR1Mb
8c 28,197,569 NEGR1CL
10 1,870,252 PPCDCIN
11 16,452,035 CRISPLD2CL, HNF4betaCL
12 1,843,370 MAPKAPK3IN
13a 16.31–16.48 KIF3AUS, SEPT8IN, CCNI2IN, AFF4IN
13b 16.71–16.87 ARHGAP26IN, NR3C1IN, NDF1P11Mb, FGF11Mb,
14a 13.14–13.94 STUB1US, RHBDL1IN, JMJD8DS, SPSB3IN, NUBP2US, HN1LDS, IGFALS1Mb
14b 14.50–15.06 PDIA2IN, C16orf62IN, DNAH3IN, ZP2MS
15 11.61–12.34 MED13LIN, TBX5IN
19 8,618,001 SYNRGIN, TBX21Mb, HNF1B1Mb
27 4.11–4.96 RPL19US, CACNB1US, DNAJC7IN, ATP6V0A1IN, STAT31Mb, STATB51Mb
  1. GGA = Gallus gallus autosome chromosome; Location = the chromosome region spanned by the significant SNPs (in base pairs); Gene name = names of associated genes; IN = intron variant; SYN = synonymous variant; DS = downstream gene variant; US = upstream gene variant; 3US = 3ʹ untranslated region; MS = missense variant; CL = closest gene (in the case of absence of genes within 5 kb from the top SNP); 1 Mb = important genes located within a 1-Mb range from the top SNP, as determined by the literature