Table 1 Summary of the genes that were identified by at least two of the four methods used FST, hapFLK, composite likelihood ratio and run of homozygosity
From: A genome-wide scan to identify signatures of selection in two Iranian indigenous chicken ecotypes
Chr | Gene ID | Gene symbol | Gene start (bp) | Gene end (bp) | Method |
|---|---|---|---|---|---|
1 | ENSGALG00000011274 | DCN | 44,050,178 | 44,202,174 | FST, ROH-L |
1 | ENSGALG00000012559 | LARGE1 | 52,678,868 | 52,954,337 | FST, CLR-L |
1 | ENSGALG00000016288 | IL1RAPL1 | 117,527,572 | 11,8143,733 | CLR-K, ROH-L-K |
2 | ENSGALG00000008591 | CACNB2 | 19,119,896 | 19,343,839 | hapFLK, CLR-L |
2 | ENSGALG00000009509 | CALCR | 23,060,807 | 23,197,789 | FST, CLR-K |
2 | ENSGALG00000010792 | AGMO | 27,838,091 | 28,021,352 | FST, CLR-L, ROH-L |
2 | ENSGALG00000010794 | MEOX2 | 28,039,372 | 28,092,164 | FST, CLR-L, ROH-L |
2 | ENSGALG00000010854 | HDAC9 | 29,076,224 | 29,386,193 | FST, CLR-L |
2 | ENSGALG00000013817 | SPIRE1 | 97,073,307 | 97,195,740 | FST, CLR-K |
3 | ENSGALG00000012973 | ESR1 | 49,053,965 | 49,241,576 | CLR-K, ROH-K |
4 | ENSGALG00000012074 | ALPK1 | 57,133,859 | 57,167,350 | FST, ROH-L |
5 | ENSGALG00000009320 | PSEN1 | 26,593,233 | 26,614,911 | FST, CLR-L |
8 | ENSGALG00000005208 | S1PR1 | 12,067,120 | 12,071,019 | FST, ROH-L |
20 | ENSGALG00000008010 | PTPN1 | 13,537,599 | 13,576,469 | FST, CLR-K |