Table 2 Summary of genomic regions significantly associated with backfat thickness and the most significant SNPs for each region
SSC | Position (Mb) | Line | Number of significant SNPs | Most significant SNP | |||
|---|---|---|---|---|---|---|---|
Position (bp) | Estimate (SE), mm | P-value | Minor allele frequency | ||||
1 | 51.17–53.51a | E | 19 | 52,652,849 | 0.28 (0.04) | 5.69 × 10–11 | 0.07 |
1 | 52.74 | H | 1 | 52,740,803 | 0.25 (0.05) | 6.86 × 10–7 | 0.41 |
1 | 52.98–54.13 | C | 20 | 53,262,786 | 0.27 (0.04) | 3.87 × 10–13 | 0.38 |
1 | 152.10–152.20 | H | 2 | 152,100,725 | 0.29 (0.05) | 2.78 × 10–8 | 0.46 |
1 | 158.31–162.35 | H | 18 | 160,773,437 | 0.41 (0.05) | 6.06 × 10–17 | 0.45 |
1 | 158.36–161.82 | B | 15 | 159,869,511 | 0.26 (0.04) | 6.20 × 10–11 | 0.29 |
1 | 159.54–162.19 | C | 21 | 160,773,437 | 0.39 (0.03) | 3.22 × 10–31 | 0.28 |
1 | 159.70–161.33 | A | 5 | 160,773,437 | 0.17 (0.03) | 1.18 × 10–9 | 0.38 |
1 | 161.07–162.35 | D | 3 | 161,610,871 | 0.17 (0.03) | 3.76 × 10–7 | 0.29 |
1 | 163.31–164.83 | C | 3 | 163,311,604 | 0.24 (0.03) | 4.24 × 10–13 | 0.34 |
1 | 269.18–271.24 | A | 26 | 270,408,730 | 0.25 (0.02) | 1.96 × 10–29 | 0.25 |
2 | 0.03–4.32 | C | 32 | 3,689,100 | 0.55 (0.04) | 1.93 × 10–47 | 0.07 |
2 | 60.64–62.25 | E | 3 | 60,697,443 | 0.16 (0.03) | 3.07 × 10–7 | 0.27 |
2 | 66.01 | E | 1 | 66,008,692 | 0.23 (0.05) | 5.82 × 10–7 | 0.09 |
2 | 69.12–69.26 | A | 3 | 69,257,674 | 0.31 (0.06) | 2.08 × 10–8 | 0.03 |
2 | 71.33–71.61 | A | 2 | 71,325,641 | 0.28 (0.06) | 2.68 × 10–7 | 0.03 |
2 | 73.84–73.92 | A | 2 | 73,837,976 | 0.27 (0.05) | 4.69 × 10–7 | 0.03 |
2 | 75.75–75.84 | A | 2 | 75,750,519 | 0.27 (0.05) | 4.15 × 10–7 | 0.03 |
2 | 76.91 | A | 1 | 76,905,754 | 0.27 (0.05) | 1.75 × 10–7 | 0.31 |
5 | 18.68–19.82 | E | 9 | 18,826,228 | 0.14 (0.02) | 3.75 × 10–9 | 0.27 |
5 | 65.30–67.16 | D | 20 | 66,103,958 | 0.21 (0.02) | 1.06 × 10–17 | 0.25 |
5 | 65.89–66.22 | B | 3 | 66,103,958 | 0.18 (0.02) | 7.97 × 10–17 | 0.45 |
5 | 66.00–66.10 | H | 2 | 66,103,958 | 0.27 (0.04) | 5.70 × 10–12 | 0.22 |
5 | 66.10–66.95 | A | 5 | 66,103,958 | 0.13 (0.02) | 2.73 × 10–16 | 0.42 |
5 | 69.40 | D | 1 | 69,400,164 | 0.15 (0.03) | 8.70 × 10–9 | 0.41 |
6 | 47.61 | B | 1 | 47,605,459 | 0.17 (0.04) | 9.00 × 10–7 | 0.47 |
6 | 147.49 | C | 1 | 147,491,028 | 0.18 (0.03) | 1.80 × 10–8 | 0.26 |
7 | 30.10–30.89 | F | 10 | 30,144,081 | 0.25 (0.04) | 1.73 × 10–8 | 0.14 |
7 | 30.32 | C | 1 | 30,317,219 | 0.22 (0.04) | 6.67 × 10–9 | 0.25 |
7 | 30.32–30.33 | B | 2 | 30,317,219 | 0.17 (0.03) | 2.04 × 10–8 | 0.29 |
7 | 31.99 | D | 1 | 31,986,215 | 0.20 (0.04) | 2.37 × 10–7 | 0.09 |
11 | 7.03–9.57 | H | 33 | 7,946,341 | 0.33 (0.05) | 1.83 × 10–10 | 0.46 |
11 | 7.84 | C | 1 | 7,841,215 | 0.22 (0.04) | 8.68 × 10–8 | 0.17 |
11 | 7.84–8.35 | A | 16 | 7,867,966 | 0.29 (0.04) | 1.64 × 10–14 | 0.06 |
11 | 8.04 | E | 1 | 8,041,891 | 0.16 (0.03) | 4.72 × 10–7 | 0.32 |
12 | 25.35–25.37 | F | 2 | 25,371,905 | 0.13 (0.03) | 7.33 × 10–8 | 0.18 |
15 | 104.07–104.90 | G | 5 | 104,902,093 | 0.14 (0.02) | 4.07 × 10–8 | 0.36 |
15 | 119.13 | F | 1 | 119,128,056 | 0.15 (0.03) | 8.92 × 10–7 | 0.14 |
16 | 33.49 | C | 1 | 33,493,718 | 0.14 (0.03) | 1.92 × 10–7 | 0.41 |
18 | 8.32–10.66 | H | 7 | 9,460,208 | 0.35 (0.05) | 3.73 × 10–11 | 0.18 |
18 | 9.51–11.78 | D | 14 | 10,578,193 | 0.37 (0.04) | 1.87 × 10–17 | 0.03 |
18 | 10.11–11.78 | A | 16 | 10,578,193 | 0.33 (0.03) | 2.77 × 10–27 | 0.03 |
18 | 10.28–10.58 | B | 3 | 10,578,193 | 0.15 (0.02) | 3.97 × 10–11 | 0.33 |
18 | 13.10 | D | 1 | 13,102,224 | 0.32 (0.06) | 1.60 × 10–8 | 0.02 |