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Table 2 Summary of genomic regions significantly associated with backfat thickness and the most significant SNPs for each region

From: Genetic architecture and major genes for backfat thickness in pig lines of diverse genetic backgrounds

SSC Position (Mb) Line Number of significant SNPs Most significant SNP
Position (bp) Estimate (SE), mm P-value Minor allele frequency
1 51.17–53.51a E 19 52,652,849 0.28 (0.04) 5.69 × 10–11 0.07
1 52.74 H 1 52,740,803 0.25 (0.05) 6.86 × 10–7 0.41
1 52.98–54.13 C 20 53,262,786 0.27 (0.04) 3.87 × 10–13 0.38
1 152.10–152.20 H 2 152,100,725 0.29 (0.05) 2.78 × 10–8 0.46
1 158.31–162.35 H 18 160,773,437 0.41 (0.05) 6.06 × 10–17 0.45
1 158.36–161.82 B 15 159,869,511 0.26 (0.04) 6.20 × 10–11 0.29
1 159.54–162.19 C 21 160,773,437 0.39 (0.03) 3.22 × 10–31 0.28
1 159.70–161.33 A 5 160,773,437 0.17 (0.03) 1.18 × 10–9 0.38
1 161.07–162.35 D 3 161,610,871 0.17 (0.03) 3.76 × 10–7 0.29
1 163.31–164.83 C 3 163,311,604 0.24 (0.03) 4.24 × 10–13 0.34
1 269.18–271.24 A 26 270,408,730 0.25 (0.02) 1.96 × 10–29 0.25
2 0.03–4.32 C 32 3,689,100 0.55 (0.04) 1.93 × 10–47 0.07
2 60.64–62.25 E 3 60,697,443 0.16 (0.03) 3.07 × 10–7 0.27
2 66.01 E 1 66,008,692 0.23 (0.05) 5.82 × 10–7 0.09
2 69.12–69.26 A 3 69,257,674 0.31 (0.06) 2.08 × 10–8 0.03
2 71.33–71.61 A 2 71,325,641 0.28 (0.06) 2.68 × 10–7 0.03
2 73.84–73.92 A 2 73,837,976 0.27 (0.05) 4.69 × 10–7 0.03
2 75.75–75.84 A 2 75,750,519 0.27 (0.05) 4.15 × 10–7 0.03
2 76.91 A 1 76,905,754 0.27 (0.05) 1.75 × 10–7 0.31
5 18.68–19.82 E 9 18,826,228 0.14 (0.02) 3.75 × 10–9 0.27
5 65.30–67.16 D 20 66,103,958 0.21 (0.02) 1.06 × 10–17 0.25
5 65.89–66.22 B 3 66,103,958 0.18 (0.02) 7.97 × 10–17 0.45
5 66.00–66.10 H 2 66,103,958 0.27 (0.04) 5.70 × 10–12 0.22
5 66.10–66.95 A 5 66,103,958 0.13 (0.02) 2.73 × 10–16 0.42
5 69.40 D 1 69,400,164 0.15 (0.03) 8.70 × 10–9 0.41
6 47.61 B 1 47,605,459 0.17 (0.04) 9.00 × 10–7 0.47
6 147.49 C 1 147,491,028 0.18 (0.03) 1.80 × 10–8 0.26
7 30.10–30.89 F 10 30,144,081 0.25 (0.04) 1.73 × 10–8 0.14
7 30.32 C 1 30,317,219 0.22 (0.04) 6.67 × 10–9 0.25
7 30.32–30.33 B 2 30,317,219 0.17 (0.03) 2.04 × 10–8 0.29
7 31.99 D 1 31,986,215 0.20 (0.04) 2.37 × 10–7 0.09
11 7.03–9.57 H 33 7,946,341 0.33 (0.05) 1.83 × 10–10 0.46
11 7.84 C 1 7,841,215 0.22 (0.04) 8.68 × 10–8 0.17
11 7.84–8.35 A 16 7,867,966 0.29 (0.04) 1.64 × 10–14 0.06
11 8.04 E 1 8,041,891 0.16 (0.03) 4.72 × 10–7 0.32
12 25.35–25.37 F 2 25,371,905 0.13 (0.03) 7.33 × 10–8 0.18
15 104.07–104.90 G 5 104,902,093 0.14 (0.02) 4.07 × 10–8 0.36
15 119.13 F 1 119,128,056 0.15 (0.03) 8.92 × 10–7 0.14
16 33.49 C 1 33,493,718 0.14 (0.03) 1.92 × 10–7 0.41
18 8.32–10.66 H 7 9,460,208 0.35 (0.05) 3.73 × 10–11 0.18
18 9.51–11.78 D 14 10,578,193 0.37 (0.04) 1.87 × 10–17 0.03
18 10.11–11.78 A 16 10,578,193 0.33 (0.03) 2.77 × 10–27 0.03
18 10.28–10.58 B 3 10,578,193 0.15 (0.02) 3.97 × 10–11 0.33
18 13.10 D 1 13,102,224 0.32 (0.06) 1.60 × 10–8 0.02
  1. aItalic type indicates overlapping genomic regions across lines