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Table 2 SNPs within significant ROHa with dominanceb effects

From: Further host-genomic characterization of total antibody response to PRRSV vaccination and its relationship with reproductive performance in commercial sows: genome-wide haplotype and zygosity analyses

ROH SNP P-valuec Estimated effectsd
SNP Add Dom Add Dom
ROH1783 ALGA0033636 0.03 0.20 0.01 0.15 − 0.22 (0.08)
ROH2475 WU_10.2_5_103352361 0.005 0.02 0.04 1.26 − 0.40 (0.19)
ROH2949 ALGA0038565 0.03 0.04 0.01 − 0.23 0.16 (0.06)
ROH2949 WU_10.2_7_11285030 0.0002 0.01 0.01 − 2.30 − 1.75 (0.68)
ROH1596 WU_10.2_10_64433795 0.01 0.02 0.01 0.70 0.25 (0.23)
ROH1596 WU_10.2_10_64461127 0.04 0.03 0.02 − 0.90 1.07 (0.44)
ROH1596 WU_10.2_10_64672192 0.03 0.0 0.005 − 0.24 − 1.17 (0.44)
ROH2306 ASGA0051263 0.04 0.16 0.04 0.72 − 0.98 (0.49)
  1. Add additive effect, Dom dominance effect
  2. aROH associated with sample-to-positive (S/P) ratio are presented in Table 1
  3. bOnly significant (P-value < 0.05) SNPs showing dominance effects (P-value < 0.05) are included in this table
  4. cP-values for the main effect (SNP) of SNP fitted as a categorical effect. SNPs with significant (P-value < 0.05) main effect were subjected to orthogonal contrasts analysis to test their respective additive (Add) and dominance (Dom) effects
  5. dEstimates for the additive (Add) and dominance (Dom) effects of each SNP. Add effects represent the effect of number of each B allele. Standard errors are between parentheses