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Table 3 Haplotypes associateda with antibody responseb to PRRSV based on haplotype GWAS

From: Further host-genomic characterization of total antibody response to PRRSV vaccination and its relationship with reproductive performance in commercial sows: genome-wide haplotype and zygosity analyses

Approach 1
Haplotype SSC Initial pos (Mb) End position (Mb) % genetic variancec PPI
Haplo1458 AA 4 108.884 108.898 2.55 0.82
Haplo2293 TT 7 25.004 25.015 30.72 1.00
Haplo2308 ATAAT 7 29.107 29.268 2.28 0.70
Approach 2
Haplotype SSC Initial pos (Mb) End position (Mb) Number of SNPsd q-value
Haplo1458 4 108.884 108.898 2 0.076
Haplo2273 7 15.347 15.373 3 0.019
Haplo2287 7 21.166 21.181 3 0.005
Haplo2292 7 24.979 24.986 3 < 0.001
Haplo2293 7 25.004 25.015 2 < 0.001
Haplo2298 7 26.522 26.715 4 0.008
Haplo2304 7 27.708 27.906 5 0.019
Haplo2959 9 33.449 33.561 4 0.033
  1. SSC, Sus scrofa chromosome
  2. aPosterior probability of inclusion (PPI) > 0.70 (Approach 1) or q-value < 0.1 (Approach 2)
  3. bMeasured as sample-to-positive (S/P) ratio
  4. c% genetic variance: percentage of the genetic variance explained by a given haplotype
  5. dNumber of SNPs in each haplotype