Table 1 Dataset composition and mean ROH and genetic parameters for the studied Italian goat breeds
From: Runs of homozygosity in the Italian goat breeds: impact of management practices in low-input systems
Breed ID | Breed name | Raw dataset | Quality checked | ROH number | ROH total length ± se | ROH length ± se | FROH | HE | HO | FIS |
|---|---|---|---|---|---|---|---|---|---|---|
ALP | Camosciata delle Alpi | 143 | 117 | 31.5 | 169.1 ± 12.1 | 5.0 ± 0.2 | 0.07 | 0.41 | 0.40 | 0.02 |
ARG | Argentata dell'Etna | 48 | 46 | 9.1 | 31.2 ± 5.8 | 2.9 ± 0.3 | 0.01 | 0.41 | 0.41 | 0.00 |
ASP | Capra dell'Aspromonte | 24 | 24 | 22.6 | 113.1 ± 29.1 | 4.2 ± 0.5 | 0.05 | 0.40 | 0.40 | 0.00 |
BIA | Bianca Monticellana | 24 | 23 | 30.8 | 158.7 ± 34.8 | 4.0 ± 0.6 | 0.06 | 0.40 | 0.39 | 0.01 |
BIO | Bionda dell'Adamello | 24 | 24 | 22.4 | 93.5 ± 20.3 | 3.5 ± 0.4 | 0.04 | 0.40 | 0.40 | 0.00 |
CAP | Capestrina | 24 | 22 | 23.5 | 117.5 ± 41.2 | 3.5 ± 0.4 | 0.05 | 0.40 | 0.40 | − 0.01 |
DDS | Derivata di Siria | 32 | 25 | 37.8 | 232.2 ± 28.8 | 5.5 ± 0.5 | 0.09 | 0.40 | 0.38 | 0.03 |
FAC | Facciuta della Valnerina | 24 | 24 | 19.5 | 167.9 ± 48.3 | 5.4 ± 0.8 | 0.07 | 0.41 | 0.39 | 0.03 |
FUL | Fulva del Lazio | 22 | 20 | 11.8 | 63.0 ± 14.2 | 4.1 ± 0.5 | 0.03 | 0.41 | 0.41 | − 0.02 |
GAR | Garganica | 40 | 37 | 21.6 | 118.8 ± 24.1 | 4.4 ± 0.3 | 0.05 | 0.40 | 0.40 | 0.00 |
GCI | Grigia Ciociara | 43 | 39 | 17.5 | 116.4 ± 21.4 | 4.8 ± 0.6 | 0.05 | 0.41 | 0.40 | 0.02 |
GIR | Girgentana | 59 | 56 | 74.5 | 322.7 ± 24.1 | 4.1 ± 0.2 | 0.13 | 0.36 | 0.36 | 0.01 |
GRF | Garfagnana | 28 | 25 | 33.1 | 147.5 ± 23.7 | 4.1 ± 0.4 | 0.06 | 0.40 | 0.40 | 0.01 |
JON | Jonica | 16 | 15 | 24.3 | 88.4 ± 16.1 | 3.4 ± 0.4 | 0.04 | 0.37 | 0.41 | − 0.10 |
LIV | Capra di Livo-Lariana | 24 | 22 | 20.6 | 56.8 ± 7.5 | 2.6 ± 0.2 | 0.02 | 0.40 | 0.40 | − 0.02 |
MAL | Maltese | 16 | 16 | 70.6 | 347.5 ± 56.1 | 4.4 ± 0.4 | 0.14 | 0.37 | 0.36 | 0.01 |
MES | Messinese | 24 | 23 | 9.3 | 36.8 ± 8.6 | 3.5 ± 0.6 | 0.01 | 0.40 | 0.41 | − 0.01 |
MON | Capra di Montefalcone | 24 | 23 | 16.7 | 136.4 ± 45.2 | 5.2 ± 0.9 | 0.06 | 0.40 | 0.40 | 0.01 |
NIC | Nicastrese | 24 | 24 | 24.2 | 170.3 ± 40.3 | 5.3 ± 0.7 | 0.07 | 0.40 | 0.39 | 0.02 |
NVE | Nera di Verzasca | 19 | 19 | 32.6 | 136.2 ± 27.2 | 3.7 ± 0.4 | 0.06 | 0.38 | 0.39 | − 0.02 |
ORO | Orobica | 23 | 23 | 92.8 | 293.6 ± 22.9 | 3.1 ± 0.1 | 0.12 | 0.35 | 0.36 | − 0.02 |
RCC | Roccaverano | 28 | 28 | 20.7 | 169.6 ± 37.6 | 6.1 ± 0.7 | 0.07 | 0.41 | 0.40 | 0.03 |
RME | Rossa Mediterranea | 46 | 40 | 24.2 | 93.9 ± 12.8 | 3.4 ± 0.2 | 0.04 | 0.39 | 0.41 | − 0.05 |
SAA | Saanen | 44 | 44 | 25.8 | 115.9 ± 10.1 | 4.2 ± 0.2 | 0.05 | 0.41 | 0.41 | − 0.01 |
SAM | Maltese sampled in Sardinia | 15 | 15 | 57.1 | 294.4 ± 49.0 | 4.8 ± 0.5 | 0.12 | 0.36 | 0.37 | − 0.03 |
SAR | Sarda | 33 | 33 | 18.1 | 77.8 ± 16.7 | 3.4 ± 0.4 | 0.03 | 0.41 | 0.40 | 0.01 |
TER | Capra di Teramo | 43 | 30 | 25.2 | 234.1 ± 36.1 | 7.3 ± 0.7 | 0.10 | 0.39 | 0.38 | 0.01 |
VAL | Valdostana | 24 | 24 | 50.9 | 272.0 ± 49.5 | 4.7 ± 0.5 | 0.11 | 0.37 | 0.37 | 0.02 |
VLS | Vallesana | 24 | 17 | 76.6 | 364.6 ± 45.6 | 4.7 ± 0.4 | 0.15 | 0.36 | 0.35 | 0.02 |
VPS | Capra della Val Passiria | 24 | 24 | 23.1 | 118.3 ± 24.3 | 4.4 ± 0.5 | 0.05 | 0.40 | 0.40 | 0.01 |