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Table 1 Dataset composition and mean ROH and genetic parameters for the studied Italian goat breeds

From: Runs of homozygosity in the Italian goat breeds: impact of management practices in low-input systems

Breed ID Breed name Raw dataset Quality checked ROH number ROH total length ± se ROH length ± se FROH HE HO FIS
ALP Camosciata delle Alpi 143 117 31.5 169.1 ± 12.1 5.0 ± 0.2 0.07 0.41 0.40 0.02
ARG Argentata dell'Etna 48 46 9.1 31.2 ± 5.8 2.9 ± 0.3 0.01 0.41 0.41 0.00
ASP Capra dell'Aspromonte 24 24 22.6 113.1 ± 29.1 4.2 ± 0.5 0.05 0.40 0.40 0.00
BIA Bianca Monticellana 24 23 30.8 158.7 ± 34.8 4.0 ± 0.6 0.06 0.40 0.39 0.01
BIO Bionda dell'Adamello 24 24 22.4 93.5 ± 20.3 3.5 ± 0.4 0.04 0.40 0.40 0.00
CAP Capestrina 24 22 23.5 117.5 ± 41.2 3.5 ± 0.4 0.05 0.40 0.40 − 0.01
DDS Derivata di Siria 32 25 37.8 232.2 ± 28.8 5.5 ± 0.5 0.09 0.40 0.38 0.03
FAC Facciuta della Valnerina 24 24 19.5 167.9 ± 48.3 5.4 ± 0.8 0.07 0.41 0.39 0.03
FUL Fulva del Lazio 22 20 11.8 63.0 ± 14.2 4.1 ± 0.5 0.03 0.41 0.41 − 0.02
GAR Garganica 40 37 21.6 118.8 ± 24.1 4.4 ± 0.3 0.05 0.40 0.40 0.00
GCI Grigia Ciociara 43 39 17.5 116.4 ± 21.4 4.8 ± 0.6 0.05 0.41 0.40 0.02
GIR Girgentana 59 56 74.5 322.7 ± 24.1 4.1 ± 0.2 0.13 0.36 0.36 0.01
GRF Garfagnana 28 25 33.1 147.5 ± 23.7 4.1 ± 0.4 0.06 0.40 0.40 0.01
JON Jonica 16 15 24.3 88.4 ± 16.1 3.4 ± 0.4 0.04 0.37 0.41 − 0.10
LIV Capra di Livo-Lariana 24 22 20.6 56.8 ± 7.5 2.6 ± 0.2 0.02 0.40 0.40 − 0.02
MAL Maltese 16 16 70.6 347.5 ± 56.1 4.4 ± 0.4 0.14 0.37 0.36 0.01
MES Messinese 24 23 9.3 36.8 ± 8.6 3.5 ± 0.6 0.01 0.40 0.41 − 0.01
MON Capra di Montefalcone 24 23 16.7 136.4 ± 45.2 5.2 ± 0.9 0.06 0.40 0.40 0.01
NIC Nicastrese 24 24 24.2 170.3 ± 40.3 5.3 ± 0.7 0.07 0.40 0.39 0.02
NVE Nera di Verzasca 19 19 32.6 136.2 ± 27.2 3.7 ± 0.4 0.06 0.38 0.39 − 0.02
ORO Orobica 23 23 92.8 293.6 ± 22.9 3.1 ± 0.1 0.12 0.35 0.36 − 0.02
RCC Roccaverano 28 28 20.7 169.6 ± 37.6 6.1 ± 0.7 0.07 0.41 0.40 0.03
RME Rossa Mediterranea 46 40 24.2 93.9 ± 12.8 3.4 ± 0.2 0.04 0.39 0.41 − 0.05
SAA Saanen 44 44 25.8 115.9 ± 10.1 4.2 ± 0.2 0.05 0.41 0.41 − 0.01
SAM Maltese sampled in Sardinia 15 15 57.1 294.4 ± 49.0 4.8 ± 0.5 0.12 0.36 0.37 − 0.03
SAR Sarda 33 33 18.1 77.8 ± 16.7 3.4 ± 0.4 0.03 0.41 0.40 0.01
TER Capra di Teramo 43 30 25.2 234.1 ± 36.1 7.3 ± 0.7 0.10 0.39 0.38 0.01
VAL Valdostana 24 24 50.9 272.0 ± 49.5 4.7 ± 0.5 0.11 0.37 0.37 0.02
VLS Vallesana 24 17 76.6 364.6 ± 45.6 4.7 ± 0.4 0.15 0.36 0.35 0.02
VPS Capra della Val Passiria 24 24 23.1 118.3 ± 24.3 4.4 ± 0.5 0.05 0.40 0.40 0.01
  1. FROH: ROH-based inbreeding; ROH total length ± se in Mb; ROH length ± se in Mb; HE: expected heterozygosity; HO: observed heterozygosity; FIS: Wright’s fixation index