Skip to main content
Fig. 3 | Genetics Selection Evolution

Fig. 3

From: Mining massive genomic data of two Swiss Braunvieh cattle populations reveals six novel candidate variants that impair reproductive success

Fig. 3

Genome-wide summary of the data mining for the Original Braunvieh population. In the outer circles, the identified haplotypes per chromosome with reduced homozygosity for the trio-based approach are indicated in dark blue and their associated haplotypes of the pgp-based approach in light blue. Note that only the haplotypes that were detected through the pgp-based approach are shown if, within the same region, another haplotype was detected by the trio-based approach. The circle with the brown dots indicates LD (r2) between haplotypes and markers on the custom SNP array. Note that the dot size correlates with the extent of LD. The third circle shows the significant haplotype association results. Note that the different colors represent the three groups of evaluated traits and the dot size correlates with the significance values accordingly. The three inner circles present the significant GWAS results across all fertility (purple), birth (red), and growth-related (yellow) traits. Scales are based on the −log10(p-value). Note that the red arrows indicate the LIG3-related haplotype OH4 described in this paper, as well as the OH2 haplotype and its associated gene TUBGCP5

Back to article page