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Table 3 B. taurus introgressed segments in the UOA_Brahman_1 reference genome that overlap with positively selected genes in the Brahman population as reported by [11]

From: Assessing Bos taurus introgression in the UOA Bos indicus assembly

Chr Start (Mb) End (Mb) Total \(\Delta\) a Size (Mb) Positive genes
3 58 59 1090.88 1 BCL10, C1orf52
5 43 44 1020.05 1 SYT10
6 2 4 2016.60 2 ANXA5, BBS7, EXOSC9
7 0 1 1034.72 1 STARD4
7 29 30 1052.05 1 ACOT12, ANKRD34B, CKMT2, FAM151B, RASGRF2, SSBP2
10 86 87 1094.05 1 CEP128
11 11 13 2084.10 2 CYP26B1, DYSF, EMX1, EXOC6B, SPR
11 14 30 17237.41 16 BIRC6, CRIM1, DPY30, MEMO1, NLRC4, SLC30A6, SPAST, TTC27, YIPF4
11 95 96 1144.55 1 MAPKAP1, PBX3
12 11 12 1076.72 1 NAA16, VWA8
13 0 21 22459.58 21 AHCY, DYNLRB1, MAFB, MAP1LC3A, PIGU, TOP1
14 67 68 1117.55 1 SDC2
14 81 83 2138.93 2 SNTB1
16 59 66 7608.05 7 ZNF648
17 0 5 5367.15 5 TTC28
23 32 33 1068.35 1 ABT1, HFE, PRSS16, SLC17A2, TRIM38, ZNF184, ZNF391
25 12 23 11676.41 11 AQP8, LCMT1, SCNN1G, USP31
26 13 14 964.55 1 RAB11FIP2
26 24 34 10574.31 10 ABCC2, CHUK, COX15, CPN1, CRTAC1, CUTC, DNMBP, ENTPD7, ERLIN1, SFRP5, SORCS1, ZFYVE27
  1. \(\Delta\): subtraction of the mean number of nearly fixed alternative allele (NFAA) sites across each chromosome from the total number of NFAA sites in each respective scanning window of B. taurus dataset; Total \(\Delta\): sum of \(\Delta\) on each continuous putative taurine segment