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Table 3 B. taurus introgressed segments in the UOA_Brahman_1 reference genome that overlap with positively selected genes in the Brahman population as reported by [11]

From: Assessing Bos taurus introgression in the UOA Bos indicus assembly

Chr

Start (Mb)

End (Mb)

Total \(\Delta\) a

Size (Mb)

Positive genes

3

58

59

1090.88

1

BCL10, C1orf52

5

43

44

1020.05

1

SYT10

6

2

4

2016.60

2

ANXA5, BBS7, EXOSC9

7

0

1

1034.72

1

STARD4

7

29

30

1052.05

1

ACOT12, ANKRD34B, CKMT2, FAM151B, RASGRF2, SSBP2

10

86

87

1094.05

1

CEP128

11

11

13

2084.10

2

CYP26B1, DYSF, EMX1, EXOC6B, SPR

11

14

30

17237.41

16

BIRC6, CRIM1, DPY30, MEMO1, NLRC4, SLC30A6, SPAST, TTC27, YIPF4

11

95

96

1144.55

1

MAPKAP1, PBX3

12

11

12

1076.72

1

NAA16, VWA8

13

0

21

22459.58

21

AHCY, DYNLRB1, MAFB, MAP1LC3A, PIGU, TOP1

14

67

68

1117.55

1

SDC2

14

81

83

2138.93

2

SNTB1

16

59

66

7608.05

7

ZNF648

17

0

5

5367.15

5

TTC28

23

32

33

1068.35

1

ABT1, HFE, PRSS16, SLC17A2, TRIM38, ZNF184, ZNF391

25

12

23

11676.41

11

AQP8, LCMT1, SCNN1G, USP31

26

13

14

964.55

1

RAB11FIP2

26

24

34

10574.31

10

ABCC2, CHUK, COX15, CPN1, CRTAC1, CUTC, DNMBP, ENTPD7, ERLIN1, SFRP5, SORCS1, ZFYVE27

  1. \(\Delta\): subtraction of the mean number of nearly fixed alternative allele (NFAA) sites across each chromosome from the total number of NFAA sites in each respective scanning window of B. taurus dataset; Total \(\Delta\): sum of \(\Delta\) on each continuous putative taurine segment