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Table 3 QTL regions from the LDLA analysis

From: Association analysis and functional annotation of imputed sequence data within genomic regions influencing resistance to gastro-intestinal parasites detected by an LDLA approach in a nucleus flock of Sarda dairy sheep

QTLR OAR Range (bp) nSNP Pos (bp) \(- \log_{10} \left( {{Pvalue}} \right)\) \({\raise0.7ex\hbox{${\widehat{{{\boldsymbol{\sigma}}_{{{\varvec{qtlS}}}}^{2} }}}$} \!\mathord{\left/ {\vphantom {{\widehat{{{\boldsymbol{\sigma}}_{{{\varvec{qtlS}}}}^{2} }}} {{\boldsymbol{\sigma}}_{{{\varvec{APD}}}}^{2} }}}\right.\kern-\nulldelimiterspace} \!\lower0.7ex\hbox{${{\boldsymbol{\sigma}}_{{{\varvec{APD}}}}^{2} }$}}\)
Q_01_1 1 99,988,914–99,988,914 1 99,988,914 6.256 0.0087
Q_02_1 2 135,598,790–135,598,790 1 135,598,790 6.078 0.0093
Q_02_2 2 213,089,849–213,166,468 3 213,135,270 6.554 0.0093
Q_04_1 4 5,252,005–9,837,812 6 5,386,849 7.404 0.0111
Q_06_1 6 12,638,149–12,695,314 3 12,695,314 6.864 0.0099
Q_07_1 7 88,040,710–88,085,726 2 88,040,710 6.762 0.0098
Q_12_1 12 35,973,543–41,153,795 19 39,430,517 9.191 0.0125
Q_15_1 15 34,024,406–34,081,200 2 34024406 7.362 0.0110
Q_19_1 19 18,933,658–31,429,916 11 18,983,777 7.302 0.0104
Q_20_1 20 16,796,770–36,098,292 154 21,170,858 12.861 0.0176
  1. QTLR: QTL region identifier; OAR Ovis aries autosome; Range: position, in bp from the ovine genome assembly v4.0, of the first and last significant SNP of the QTL region; nSNP number of SNPs from the OvineSNP50 Beadchip exceeding the 0.05 genome-wide significance threshold \(- {\text{log}}_{10} \left( {Pvalue} \right) > 6\); Pos: position of the most significant SNP in bp; \(- {\text{log}}_{10} \left( {Pvalue} \right)\): negative logarithm of the p-value of the most significant SNP; \({\raise0.7ex\hbox{${\widehat{{\sigma_{qtlS}^{2} }}}$} \!\mathord{\left/ {\vphantom {{\widehat{{\sigma_{qtlS}^{2} }}} {\widehat{{\sigma_{APD}^{2} }}}}}\right.\kern-\nulldelimiterspace} \!\lower0.7ex\hbox{${\widehat{{\sigma_{APD}^{2} }}}$}}\): ratio between the ANOVA estimator of the QTL variance at peak position (\(\widehat{{\sigma_{qtlS}^{2} }}\)) and the total phenotypic variance of the pseudo-phenotypes (\(\widehat{{\sigma_{APD}^{2} }}\))