Table 2 Summary of the number of sequenced animals per population, average genome coverage, average nucleotide diversity, average ROH estimates (number, length) and maximum length of ROH per breed
Breed | Number of animals | Average genome coverage | Average nucleotide diversity(π) | Average number of ROH | Average length of ROHa (kb) | Maximum length of ROH (kb) |
|---|---|---|---|---|---|---|
Appenzell goat (APZ) | 24 | 18.76 | 1.43 × 10–3 | 1328 | 433 | 21,851 |
Grisons Striped goat (BST) | 24 | 21.34 | 1.61 × 10–3 | 1174 | 321 | 21,564 |
Capra Grigia (CAG) | 12 | 22.58 | 1.62 × 10–3 | 1376 | 246 | 23,157 |
Chamois Colored goat (GFG) | 19 | 20.65 | 1.60 × 10–3 | 1321 | 292 | 20,806 |
Nera Verzasca (NER) | 24 | 17.11 | 1.57 × 10–3 | 1436 | 299 | 33,837 |
Peacock goat (PFA) | 24 | 20.26 | 1.59 × 10–3 | 1377 | 263 | 17,846 |
Saanen goat (SAN) | 19 | 17.56 | 1.52 × 10–3 | 1382 | 361 | 33,602 |
St. Gallen Booted goat (STG) | 24 | 16.95 | 1.51 × 10–3 | 1327 | 365 | 20,689 |
Toggenburg goat (TOG) | 24 | 19.46 | 1.43 × 10–3 | 1375 | 427 | 23,486 |
Valais Blackneck goat (VAG) | 23 | 25.97 | 1.46 × 10–3 | 1399 | 413 | 17,566 |
Bezoar goat (Capra aegagrus, BEZ) | 9 | 11.55 | 1.81 × 10–3 | 2018 | 323 | 25,268 |
Total | 226 | 19.60 | 1.72 × 10–3 | 1374 | 347 | 33,837 |