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Table 3 Description of the 15 ROH islands shared among the 217 individuals from the modern breeds

From: Runs of homozygosity in Swiss goats reveal genetic changes associated with domestication and modern selection

Chr Start pos End pos Average fraction modern breeds Average fraction Bezoar Genes annotated in ROH regions
3 110,837,228 110,952,170 84.94 21.28 CD84, LOC102170372, SLAMF1
5 36,289 216,534 88.58 53.86 No genes
5 98,924,460 99,173,351 94.59 33.57 LOC108636060, LOC102183506
8 70,737,252 74,882,654 86.15 42.62 STC1, LOC102183600, APTX, DNAJA1, SMU1, B4GALT1, SPINK4, BAG1, CHMP5, NFX1, AQP7, AQP3, NOL6, UBE2R2, UBAP2, DCAF12
9 91,295,758 91,426,085 86.01 83.13 DLL1, FAM120B
10 17,036,648 17,211,934 84.75 27.09 PROX2, YLPM1, FCF1
13 53,007,666 53,319,681 95.31 73.16 MYT1, OPRL1, LKAAEAR1, RGS19, TCEA2, PRPF6, SAMD10, DNAJC5, TPD52L2, ZBTB46
13 56,416,469 56,517,376 80.75 29.76 ZNF831
14 22,802,897 22,937,158 82.65 33.03 ZFPM2
15 32,098,192 32,367,622 84.46 50.56 RHOG, STIM1, RRM1, LOC108637588, LOC102177547
17 8,865,949 8,935,273 81.32 88.89 LOC108637850, LOC102177554
18 15,526,880 15,552,439 82.90 88.89 CBFA2T3
20 71,475,167 71,668,860 95.43 45.68 SLC9A3, EXOC3, AHRR
29 45,996,028 46,047,264 82.44 74.07 PTDSS2, ANO9, IFITM5
29 50,476,146 50,541,044 81.81 88.89 LOC102176024
Total 87.00 44.64  
  1. Chr: chromosome number; Start pos: start position of each ROH island; End pos: end position of each ROH island;
  2. Average fraction for the individuals of the modern breeds sample (N = 217) and average fraction for the individuals from wild bezoar (N = 9)
  3. Rows entirely in italic characters indicate ROH islands that are only seen in modern breeds, and not in Bezoar goats (homozygous bezoar goats < 55%)