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Table 4 Combinations of minor allele frequencies for lines \({A}\) and \({B}\) investigated in the simulationa

From: Comparison of linkage disequilibrium estimated from genotypes versus haplotypes for crossbred populations

Line \({B}\)

Line \({A}\)

0.05

0.15

0.25

0.35

0.45

0.05

X

X

X

X

X

0.15

 

X

X

X

X

0.25

  

X

X

X

0.35

   

X

X

0.45

    

X

  1. aAllele frequencies were equal for the two loci (\(M\) and \(N\)) within a line. Apart from the diagonal elements, the allele frequencies differed between the two lines. Scenarios in this Table were replicated for sample sizes of 900, 1800, and 2700, and \({r}^{2}\) in the parental lines equal to 0.2, 0.4, 0.6, and 0.8 (equal for both lines), yielding a total of 3*4*15 = 180 scenarios
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Genetics Selection Evolution

ISSN: 1297-9686