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Table 4 Combinations of minor allele frequencies for lines \({A}\) and \({B}\) investigated in the simulationa

From: Comparison of linkage disequilibrium estimated from genotypes versus haplotypes for crossbred populations

Line \({B}\) Line \({A}\)
0.05 0.15 0.25 0.35 0.45
0.05 X X X X X
0.15   X X X X
0.25    X X X
0.35     X X
0.45      X
  1. aAllele frequencies were equal for the two loci (\(M\) and \(N\)) within a line. Apart from the diagonal elements, the allele frequencies differed between the two lines. Scenarios in this Table were replicated for sample sizes of 900, 1800, and 2700, and \({r}^{2}\) in the parental lines equal to 0.2, 0.4, 0.6, and 0.8 (equal for both lines), yielding a total of 3*4*15 = 180 scenarios