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Table 5 Summary of estimates of bias and precision (standard deviation) of \({r}^{2}\) using unphased genotype and haplotype data

From: Comparison of linkage disequilibrium estimated from genotypes versus haplotypes for crossbred populations

Parameter Haplotype Genotype
Average absolute bias across 180 scenarios 0.0003 0.0004
Maximum absolute bias 0.002 0.003
Average absolute bias sample size 900 0.0003 0.0005
Average absolute bias sample size 2700 0.0001 0.0001
Standard deviation (SD) across 180 scenarios 0.021 0.023
Maximum SD 0.055 0.057
Average SD with sample size of 900 0.027 0.031
Average SD with sample size of 2700 0.016 0.018