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Table 5 Summary of estimates of bias and precision (standard deviation) of \({r}^{2}\) using unphased genotype and haplotype data

From: Comparison of linkage disequilibrium estimated from genotypes versus haplotypes for crossbred populations

Parameter

Haplotype

Genotype

Average absolute bias across 180 scenarios

0.0003

0.0004

Maximum absolute bias

0.002

0.003

Average absolute bias sample size 900

0.0003

0.0005

Average absolute bias sample size 2700

0.0001

0.0001

Standard deviation (SD) across 180 scenarios

0.021

0.023

Maximum SD

0.055

0.057

Average SD with sample size of 900

0.027

0.031

Average SD with sample size of 2700

0.016

0.018