Trait
|
‘Top SNPs’ (− log10(p-value) ≥ 2)
|
‘Top SNPs’ (− log10(p-value) ≥ 3)
|
---|
HTMYslope
|
9207 (51,750)
|
1654 (44,219)
|
HTFYslope
|
9352 (51,894)
|
1708 (44,277)
|
HTPYslope
|
9633 (52,168)
|
1624 (44,190)
|
Meta-GWAS
|
9090 (51,636)
|
2365 (44,929)
|
- Markers were selected based on the GWAS cut-off thresholds of − log10(p-value) ≥ 2 and − log10(p-value) ≥ 3. The values in brackets are the final number of SNPs after adding selected ‘top SNPs’ to the 50k SNP data used in the BayesRC analyses (i.e., 42,572 SNPs + top SNPs). Traits are defined as heat tolerance milk (HTMYslope), fat (HTFYslope) and protein (HTPYslope) yield slope traits