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Table 1 Overview of the 50K genotype data

From: Recombination rates in pigs differ between breeds, sexes and individuals, and are associated with the RNF212, SYCP2, PRDM7, MEI1 and MSH4 loci

Breed

Numbers of

SNPs

Animals

Males

Females

Landrace (LR)

50,705

70,943

11,685

59,258

Duroc (DU)

50,705

17,137

8397

8740

Large White (LW)

50,705

95,613

32,683

62,930

Pietrain (PI)

50,705

22,784

15,009

7775

Synthetic (SY)

50,705

50,818

30,198

20,620

  1. Number of animals and SNPs in the datasets after filtering for a minor allele frequency lower than 0.01, a call rate lower than 0.95, and a strong deviation from Hardy–Weinberg equilibrium (χ2 > 600). SNPs on sex chromosomes and unmapped SNPs were also removed
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Genetics Selection Evolution

ISSN: 1297-9686