From: Estimation of dam line composition of 3-way crossbred animals using genomic information
Measure | Lines | r2 threshold for pruning | |||||
---|---|---|---|---|---|---|---|
0.1 | 0.3 | 0.5 | 0.7 | 0.9 | No. | ||
Number of SNPs | Close | 305 | 1364 | 2661 | 3781 | 4679 | 5720 |
Distant | 281 | 1190 | 2425 | 3543 | 4499 | 5753 | |
Unrelated | 260 | 936 | 1953 | 3016 | 3989 | 5740 | |
Accuracy | Close | 0.560 | 0.694 | 0.696 | 0.689 | 0.682 | 0.675 |
Distant | 0.787 | 0.890 | 0.901 | 0.897 | 0.890 | 0.886 | |
Unrelated | 0.891 | 0.958 | 0.966 | 0.965 | 0.963 | 0.959 | |
Dispersion bias | Close | 0.404 | 0.533 | 0.536 | 0.531 | 0.524 | 0.517 |
Distant | 0.653 | 0.808 | 0.824 | 0.820 | 0.809 | 0.801 | |
Unrelated | 0.810 | 0.916 | 0.930 | 0.930 | 0.925 | 0.922 | |
Maximum error | Close | 0.404 | 0.330 | 0.332 | 0.334 | 0.341 | 0.348 |
Distant | 0.285 | 0.192 | 0.181 | 0.181 | 0.186 | 0.190 | |
Unrelated | 0.181 | 0.110 | 0.104 | 0.103 | 0.109 | 0.112 | |
RMSE | Close | 0.132 | 0.106 | 0.106 | 0.107 | 0.108 | 0.109 |
Distant | 0.083 | 0.056 | 0.053 | 0.054 | 0.056 | 0.058 | |
Unrelated | 0.056 | 0.034 | 0.031 | 0.031 | 0.032 | 0.034 |