Table 6 Accuracy of GEBV, regression of TBV on GEBV (Slope), and bias and standard error (SE) of estimates of heritabilities (\({\hat{h}}^2\)) and genetic correlations (GC) with and without eigenvalue decomposition (EVD), based on 100 replicates of the simulation of scenario 1
From: A new approach fits multivariate genomic prediction models efficiently
Method | Accuracy | Slope | Bias of \({\hat{h}}^2\) | SE of \({\hat{h}}^2\) | Bias of GC | SE of GC |
|---|---|---|---|---|---|---|
REML-EVD | 0.87 (0.02) | 1.00 (0.03) | − 0.01 (0.02) | 0.04 (0.01) | 0.00 (0.04) | 0.14 (0.03) |
PEGS | 0.86 (0.02) | 1.02 (0.03) | − 0.03 (0.04) | 0.07 (0.02) | 0.02 (0.08) | 0.18 (0.04) |
PEGS-EVD | 0.86 (0.02) | 1.02 (0.03) | − 0.04 (0.04) | 0.07 (0.02) | 0.02 (0.08) | 0.18 (0.04) |
THGS | 0.86 (0.02) | 1.02 (0.03) | − 0.03 (0.04) | 0.07 (0.02) | 0.01 (0.08) | 0.17 (0.04) |
THGS-EVD | 0.87 (0.02) | 1.00 (0.03) | − 0.02 (0.03) | 0.05 (0.01) | 0.00 (0.04) | 0.13 (0.02) |
UV-THGS | 0.84 (0.04) | 1.06 (0.09) | − 0.02 (0.05) | 0.08 (0.02) | – | – |
UV-THGS-EVD | 0.84 (0.03) | 1.03 (0.04) | − 0.03 (0.03) | 0.05 (0.01) | – | – |