Rare and population-specific functional variation across pig lines

Table 1 Number of sequenced and analysed pigs

Line	Individuals sequenced	Individuals sequenced by coverage				Individuals used in analyses
Line	Individuals sequenced	1×	2×	5×	15–30×	Pedigree	Imputed	GWAS
A	1856	1044	649	73	90	122,753	104,661	88,342
B	1491	628	728	54	81	84,420	66,608	56,173
C	1366	685	545	44	92	88,964	76,230	64,285
D	760	394	274	27	65	50,797	41,573	–
E	731	362	311	16	42	79,981	60,474	–
F	701	351	255	28	67	52,470	39,263	–
G	445	217	176	15	37	21,129	17,224	–
H	381	193	137	16	35	35,309	29,330	–
I	321	111	158	18	34	15,495	5247	–

ISSN: 1297-9686